@_tenum_t _tSBMLErrorCode_t_t _tCodes_t _tfor_t _tall_t _tSBML_t-_tlevel_t _terrors_t _tand_t _twarnings_t _tfrom_t _tthe_t _tcore_t _tspecification_t.
| Enumerator |
|---|
| UnknownError | Encountered unknown internal libSBML error.
|
| NotUTF8 | File does not use UTF-8 encoding.
|
| UnrecognizedElement | Encountered unrecognized element.
|
| NotSchemaConformant | Document does not conform to the SBML XML schema.
|
| L3NotSchemaConformant | Document is not well-formed XML.
|
| InvalidMathElement | Invalid MathML.
|
| DisallowedMathMLSymbol | Disallowed MathML symbol found.
|
| DisallowedMathMLEncodingUse | Use of the MathML 'encoding' attribute is not allowed on this element.
|
| DisallowedDefinitionURLUse | Use of the MathML 'definitionURL' attribute is not allowed on this element.
|
| BadCsymbolDefinitionURLValue | Invalid <csymbol> 'definitionURL' attribute value.
|
| DisallowedMathTypeAttributeUse | Use of the MathML 'type' attribute is not allowed on this element.
|
| DisallowedMathTypeAttributeValue | Disallowed MathML 'type' attribute value.
|
| LambdaOnlyAllowedInFunctionDef | Use of <lambda> not permitted outside of FunctionDefinition objects.
|
| BooleanOpsNeedBooleanArgs | Non-Boolean argument given to Boolean operator.
|
| NumericOpsNeedNumericArgs | Non-numerical argument given to numerical operator.
|
| ArgsToEqNeedSameType | Arguments to <eq> and <neq> must have the same data types.
|
| PiecewiseNeedsConsistentTypes | Terms in a <piecewise> expression must have consistent data types.
|
| PieceNeedsBoolean | The second argument of a <piece> expression must yield a Boolean value.
|
| ApplyCiMustBeUserFunction | A <ci> element in this context must refer to a function definition.
|
| ApplyCiMustBeModelComponent | A <ci> element in this context must refer to a model component.
|
| KineticLawParametersAreLocalOnly | Cannot use a KineticLaw local parameter outside of its local scope.
|
| MathResultMustBeNumeric | A formula's result in this context must be a numerical value.
|
| OpsNeedCorrectNumberOfArgs | Incorrect number of arguments given to MathML operator.
|
| InvalidNoArgsPassedToFunctionDef | Incorrect number of arguments given to function invocation.
|
| DisallowedMathUnitsUse | Attribute 'units' is only permitted on <cn> elements.
|
| InvalidUnitsValue | Invalid value given for the 'units' attribute.
|
| CiCannotReference0DCompartment | A <ci> element cannot reference a 0D compartment.
|
| RateOfTargetMustBeCi | A 'rateOf' <csymbol> must target only a single <ci> element.
|
| RateOfTargetCannotBeAssigned | The target of a 'rateOf' <csymbol> cannot be assigned.
|
| RateOfSpeciesTargetCompartmentNot | Compartments of non-substance <species> referenced by 'rateOf' must not vary.
|
| DuplicateComponentId | Duplicate 'id' attribute value.
|
| DuplicateUnitDefinitionId | Duplicate unit definition 'id' attribute value.
|
| DuplicateLocalParameterId | Duplicate local parameter 'id' attribute value.
|
| MultipleAssignmentOrRateRules | Multiple rules for the same variable are not allowed.
|
| MultipleEventAssignmentsForId | Multiple event assignments for the same variable are not allowed.
|
| EventAndAssignmentRuleForId | An event assignment and an assignment rule must not have the same value for 'variable'.
|
| DuplicateMetaId | Duplicate 'metaid' attribute value.
|
| InvalidSBOTermSyntax | Invalid syntax for an 'sboTerm' attribute value.
|
| InvalidMetaidSyntax | Invalid syntax for a 'metaid' attribute value.
|
| InvalidIdSyntax | Invalid syntax for an 'id' attribute value.
|
| InvalidUnitIdSyntax | Invalid syntax for the identifier of a unit.
|
| InvalidNameSyntax | Invalid syntax for a 'name' attribute value.
|
| DanglingUnitReference | Dangling reference to a unit.
|
| MissingAnnotationNamespace | Missing declaration of the XML namespace for the annotation.
|
| DuplicateAnnotationNamespaces | Multiple annotations using the same XML namespace.
|
| SBMLNamespaceInAnnotation | The SBML XML namespace cannot be used in an Annotation object.
|
| MultipleAnnotations | Only one Annotation object is permitted under a given SBML object.
|
| InconsistentArgUnits | The units of the function call's arguments are not consistent with its definition.
|
| InconsistentKineticLawUnitsL3 | The kinetic law's units are inconsistent with those of other kinetic laws in the model.
|
| AssignRuleCompartmentMismatch | Mismatched units in assignment rule for compartment.
|
| AssignRuleSpeciesMismatch | Mismatched units in assignment rule for species.
|
| AssignRuleParameterMismatch | Mismatched units in assignment rule for parameter.
|
| AssignRuleStoichiometryMismatch | Mismatched units in assignment rule for stoichiometry.
|
| InitAssignCompartmenMismatch | Mismatched units in initial assignment to compartment.
|
| InitAssignSpeciesMismatch | Mismatched units in initial assignment to species.
|
| InitAssignParameterMismatch | Mismatched units in initial assignment to parameter.
|
| InitAssignStoichiometryMismatch | Mismatched units in initial assignment to stoichiometry.
|
| RateRuleCompartmentMismatch | Mismatched units in rate rule for compartment.
|
| RateRuleSpeciesMismatch | Mismatched units in rate rule for species.
|
| RateRuleParameterMismatch | Mismatched units in rate rule for parameter.
|
| RateRuleStoichiometryMismatch | Mismatched units in rate rule for stoichiometry.
|
| KineticLawNotSubstancePerTime | The units of the kinetic law are not 'substance'/'time'.
|
| SpeciesInvalidExtentUnits | The species' units are not consistent with units of extent.
|
| DelayUnitsNotTime | The units of the delay expression are not units of time.
|
| EventAssignCompartmentMismatch | Mismatched units in event assignment for compartment.
|
| EventAssignSpeciesMismatch | Mismatched units in event assignment for species.
|
| EventAssignParameterMismatch | Mismatched units in event assignment for parameter.
|
| EventAssignStoichiometryMismatch | Mismatched units in event assignment for stoichiometry.
|
| PriorityUnitsNotDimensionless | The units of a priority expression must be 'dimensionless'.
|
| UpperUnitBound | Upper boundary of unit validation diagnostic codes.
|
| OverdeterminedSystem | The model is overdetermined.
|
| InvalidModelSBOTerm | Invalid 'sboTerm' attribute value for a Model object.
|
| InvalidFunctionDefSBOTerm | Invalid 'sboTerm' attribute value for a FunctionDefinition object.
|
| InvalidParameterSBOTerm | Invalid 'sboTerm' attribute value for a Parameter object.
|
| InvalidInitAssignSBOTerm | Invalid 'sboTerm' attribute value for an InitialAssignment object.
|
| InvalidRuleSBOTerm | Invalid 'sboTerm' attribute value for a Rule object.
|
| InvalidConstraintSBOTerm | Invalid 'sboTerm' attribute value for a Constraint object.
|
| InvalidReactionSBOTerm | Invalid 'sboTerm' attribute value for a Reaction object.
|
| InvalidSpeciesReferenceSBOTerm | Invalid 'sboTerm' attribute value for a SpeciesReference object.
|
| InvalidKineticLawSBOTerm | Invalid 'sboTerm' attribute value for a KineticLaw object.
|
| InvalidEventSBOTerm | Invalid 'sboTerm' attribute value for an Event object.
|
| InvalidEventAssignmentSBOTerm | Invalid 'sboTerm' attribute value for an EventAssignment object.
|
| InvalidCompartmentSBOTerm | Invalid 'sboTerm' attribute value for a Compartment object.
|
| InvalidSpeciesSBOTerm | Invalid 'sboTerm' attribute value for a Species object.
|
| InvalidCompartmentTypeSBOTerm | Invalid 'sboTerm' attribute value for a CompartmentType object.
|
| InvalidSpeciesTypeSBOTerm | Invalid 'sboTerm' attribute value for a SpeciesType object.
|
| InvalidTriggerSBOTerm | Invalid 'sboTerm' attribute value for an Event Trigger object.
|
| InvalidDelaySBOTerm | Invalid 'sboTerm' attribute value for an Event Delay object.
|
| InvalidLocalParameterSBOTerm | Invalid 'sboTerm' attribute value for a LocalParameter object.
|
| InvalidSBMLElementSBOTerm | Invalid 'sboTerm' attribute value for the <sbml> element.
|
| NotesNotInXHTMLNamespace | Notes must be placed in the XHTML XML namespace.
|
| NotesContainsXMLDecl | XML declarations are not permitted in Notes objects.
|
| NotesContainsDOCTYPE | XML DOCTYPE elements are not permitted in Notes objects.
|
| InvalidNotesContent | Invalid notes content found.
|
| OnlyOneNotesElementAllowed | Only one Notes subobject is permitted on a given SBML object.
|
| InvalidNamespaceOnSBML | Invalid XML namespace for the SBML container element.
|
| MissingOrInconsistentLevel | Missing or inconsistent value for the 'level' attribute.
|
| MissingOrInconsistentVersion | Missing or inconsistent value for the 'version' attribute.
|
| PackageNSMustMatch | Inconsistent or invalid SBML Level/Version for the package namespace declaration.
|
| LevelPositiveInteger | The 'level' attribute must have a positive integer value.
|
| VersionPositiveInteger | The 'version' attribute must have a positive integer value.
|
| AllowedAttributesOnSBML | Invalid attribute found on the SBML container element.
|
| L3PackageOnLowerSBML | An L3 package ns found on the SBML container element.
|
| MissingModel | No model definition found.
|
| IncorrectOrderInModel | Incorrect ordering of components within the Model object.
|
| EmptyListElement | Empty ListOf___ object found.
|
| NeedCompartmentIfHaveSpecies | The presence of a species requires a compartment.
|
| OneOfEachListOf | Only one of each kind of ListOf___ object is allowed inside a Model object.
|
| OnlyFuncDefsInListOfFuncDefs | Only FunctionDefinition, Notes and Annotation objects are allowed in ListOfFunctionDefinitions.
|
| OnlyUnitDefsInListOfUnitDefs | Only UnitDefinition, Notes and Annotation objects are allowed in ListOfUnitDefinitions objects.
|
| OnlyCompartmentsInListOfCompartments | Only Compartment, Notes and Annotation objects are allowed in ListOfCompartments objects.
|
| OnlySpeciesInListOfSpecies | Only Species, Notes and Annotation objects are allowed in ListOfSpecies objects.
|
| OnlyParametersInListOfParameters | Only Parameter, Notes and Annotation objects are allowed in ListOfParameters objects.
|
| OnlyInitAssignsInListOfInitAssigns | Only InitialAssignment, Notes and Annotation objects are allowed in ListOfInitialAssignments objects.
|
| OnlyRulesInListOfRules | Only Rule, Notes and Annotation objects are allowed in ListOfRules objects.
|
| OnlyConstraintsInListOfConstraints | Only Constraint, Notes and Annotation objects are allowed in ListOfConstraints objects.
|
| OnlyReactionsInListOfReactions | Only Reaction, Notes and Annotation objects are allowed in ListOfReactions objects.
|
| OnlyEventsInListOfEvents | Only Event, Notes and Annotation objects are allowed in ListOfEvents objects.
|
| L3ConversionFactorOnModel | A 'conversionFactor' attribute value must reference a Parameter object.
|
| L3TimeUnitsOnModel | Invalid 'timeUnits' attribute value.
|
| L3VolumeUnitsOnModel | Invalid 'volumeUnits' attribute value.
|
| L3AreaUnitsOnModel | Invalid 'areaUnits' attribute value.
|
| L3LengthUnitsOnModel | Invalid 'lengthUnits' attribute value.
|
| L3ExtentUnitsOnModel | Invalid 'extentUnits' attribute value.
|
| AllowedAttributesOnModel | Invalid attribute found on the Model object.
|
| AllowedAttributesOnListOfFuncs | Invalid attribute found on the ListOfFunctionDefinitions object.
|
| AllowedAttributesOnListOfUnitDefs | Invalid attribute found on the ListOfUnitDefinitions object.
|
| AllowedAttributesOnListOfComps | Invalid attribute found on the ListOfCompartments object.
|
| AllowedAttributesOnListOfSpecies | Invalid attribute found on the ListOfSpecies object.
|
| AllowedAttributesOnListOfParams | Invalid attribute found on the ListOfParameters object.
|
| AllowedAttributesOnListOfInitAssign | Invalid attribute found on the ListOfInitialAssignments object.
|
| AllowedAttributesOnListOfRules | Invalid attribute found on the ListOfRules object.
|
| AllowedAttributesOnListOfConstraints | Invalid attribute found on the ListOfConstraints object.
|
| AllowedAttributesOnListOfReactions | Invalid attribute found on the ListOfReactions object.
|
| AllowedAttributesOnListOfEvents | Invalid attribute found on the ListOfEvents object.
|
| L3V2SubstanceUnitsOnModel | Invalid 'substanceUnits' attribute value.
|
| FunctionDefMathNotLambda | Invalid expression found in the function definition.
|
| InvalidApplyCiInLambda | Invalid forward reference in the MathML <apply><ci>...</ci></apply> expression.
|
| RecursiveFunctionDefinition | Recursive function definitions are not permitted.
|
| InvalidCiInLambda | Invalid <ci> reference found inside the <lambda> mathematical formula.
|
| InvalidFunctionDefReturnType | A function's return type must be either a number or a Boolean.
|
| OneMathElementPerFunc | A FunctionDefinition object may contain one <math> element.
|
| AllowedAttributesOnFunc | Invalid attribute found on the FunctionDefinition object.
|
| OnlyCiInsideBVar | |
| InvalidUnitDefId | Invalid 'id' attribute value for a UnitDefinition object.
|
| InvalidSubstanceRedefinition | Invalid redefinition of built-in type 'substance'.
|
| InvalidLengthRedefinition | Invalid redefinition of built-in type 'length'.
|
| InvalidAreaRedefinition | Invalid redefinition of built-in type name 'area'.
|
| InvalidTimeRedefinition | Invalid redefinition of built-in type name 'time'.
|
| InvalidVolumeRedefinition | Invalid redefinition of built-in type name 'volume'.
|
| VolumeLitreDefExponentNotOne | Must use 'exponent'=1 when defining 'volume' in terms of litres.
|
| VolumeMetreDefExponentNot3 | Must use 'exponent'=3 when defining 'volume' in terms of metres.
|
| EmptyListOfUnits | An empty list of Unit objects is not permitted in a UnitDefinition object.
|
| InvalidUnitKind | Invalid value for the 'kind' attribute of a UnitDefinition object.
|
| OffsetNoLongerValid | Unit attribute 'offset' is not supported in this Level+Version of SBML.
|
| CelsiusNoLongerValid | Unit name 'Celsius' is not defined in this Level+Version of SBML.
|
| EmptyUnitListElement | A ListOfUnits object must not be empty.
|
| OneListOfUnitsPerUnitDef | At most one ListOfUnits object is allowed inside a UnitDefinition object.
|
| OnlyUnitsInListOfUnits | Only Unit, Notes and Annotation objects are allowed in ListOfUnits objects.
|
| AllowedAttributesOnUnitDefinition | Invalid attribute found on the UnitDefinition object.
|
| AllowedAttributesOnListOfUnits | Invalid attribute found on the ListOfUnits object.
|
| AllowedAttributesOnUnit | Invalid attribute found on the Unit object.
|
| ZeroDimensionalCompartmentSize | Invalid use of the 'size' attribute for a zero-dimensional compartment.
|
| ZeroDimensionalCompartmentUnits | Invalid use of the 'units' attribute for a zero-dimensional compartment.
|
| ZeroDimensionalCompartmentConst | Zero-dimensional compartments must be defined to be constant.
|
| UndefinedOutsideCompartment | Invalid value for the 'outside' attribute of a Compartment object.
|
| RecursiveCompartmentContainment | Recursive nesting of compartments via the 'outside' attribute is not permitted.
|
| ZeroDCompartmentContainment | Invalid nesting of zero-dimensional compartments.
|
| Invalid1DCompartmentUnits | Invalid value for the 'units' attribute of a one-dimensional compartment.
|
| Invalid2DCompartmentUnits | Invalid value for the 'units' attribute of a two-dimensional compartment.
|
| Invalid3DCompartmentUnits | Invalid value for the 'units' attribute of a three-dimensional compartment.
|
| InvalidCompartmentTypeRef | Invalid value for the 'compartmentType' attribute of a compartment.
|
| OneDimensionalCompartmentUnits | No units defined for 1-D compartment.
|
| TwoDimensionalCompartmentUnits | No units defined for 2-D compartment.
|
| ThreeDimensionalCompartmentUnits | No units defined for 3-D Compartment object.
|
| AllowedAttributesOnCompartment | Invalid attribute found on Compartment object.
|
| NoUnitsOnCompartment | No units defined for Compartment object.
|
| InvalidSpeciesCompartmentRef | Invalid value found for Species 'compartment' attribute.
|
| HasOnlySubsNoSpatialUnits | Attribute 'spatialSizeUnits' must not be set if 'hasOnlySubstanceUnits'='true'.
|
| NoSpatialUnitsInZeroD | Attribute 'spatialSizeUnits' must not be set if the compartment is zero-dimensional.
|
| NoConcentrationInZeroD | Attribute 'initialConcentration' must not be set if the compartment is zero-dimensional.
|
| SpatialUnitsInOneD | Invalid value for 'spatialSizeUnits' attribute of a one-dimensional compartment.
|
| SpatialUnitsInTwoD | Invalid value for the 'spatialSizeUnits' attribute of a two-dimensional compartment.
|
| SpatialUnitsInThreeD | Invalid value for the 'spatialSizeUnits' attribute of a three-dimensional compartment.
|
| InvalidSpeciesSusbstanceUnits | Invalid value for a Species 'units' attribute.
|
| BothAmountAndConcentrationSet | Cannot set both 'initialConcentration' and 'initialAmount' attributes simultaneously.
|
| NonBoundarySpeciesAssignedAndUsed | Cannot use a non-boundary species in both reactions and rules simultaneously.
|
| NonConstantSpeciesUsed | Cannot use a constant, non-boundary species as a reactant or product.
|
| InvalidSpeciesTypeRef | Invalid value for the 'speciesType' attribute of a species.
|
| MultSpeciesSameTypeInCompartment | Cannot have multiple species of the same species type in the same compartment.
|
| MissingSpeciesCompartment | Missing value for the 'compartment' attribute.
|
| SpatialSizeUnitsRemoved | Attribute 'spatialSizeUnits' is not supported in this Level+Version of SBML.
|
| SubstanceUnitsOnSpecies | No substance units defined for the species.
|
| ConversionFactorOnSpecies | Invalid value for the 'conversionFactor' attribute.
|
| AllowedAttributesOnSpecies | Invalid attribute found on Species object.
|
| InvalidParameterUnits | Invalid value for the 'units' attribute of a Parameter object.
|
| ParameterUnits | No units defined for the parameter.
|
| ConversionFactorMustConstant | A conversion factor must reference a Parameter object declared to be a constant.
|
| AllowedAttributesOnParameter | Invalid attribute found on Parameter object.
|
| InvalidInitAssignSymbol | Invalid value for the 'symbol' attribute of an InitialAssignment object.
|
| MultipleInitAssignments | Multiple initial assignments for the same 'symbol' value are not allowed.
|
| InitAssignmentAndRuleForSameId | Cannot set a value using both an initial assignment and an assignment rule simultaneously.
|
| OneMathElementPerInitialAssign | An InitialAssignment object may contain one <math> element.
|
| AllowedAttributesOnInitialAssign | Invalid attribute found on an InitialAssignment object.
|
| InitAssignmentCannotRef0DComp | InitialAssignment cannot reference 0D compartment.
|
| InvalidAssignRuleVariable | Invalid value for the 'variable' attribute of an AssignmentRule object.
|
| InvalidRateRuleVariable | Invalid value for the 'variable' attribute of a RateRule object.
|
| AssignmentToConstantEntity | An assignment rule cannot assign an entity declared to be constant.
|
| RateRuleForConstantEntity | A rate rule cannot assign an entity declared to be constant.
|
| RepeatedRule10304 | |
| CircularRuleDependency | Circular dependencies involving rules and reactions are not permitted.
|
| OneMathElementPerRule | A rule object may contain one <math> element.
|
| AllowedAttributesOnAssignRule | Invalid attribute found on an AssignmentRule object.
|
| AllowedAttributesOnRateRule | Invalid attribute found on a RateRule object.
|
| AllowedAttributesOnAlgRule | Invalid attribute found on an AlgebraicRule object.
|
| RuleCannotRef0DComp | Rule cannot reference 0D compartment.
|
| CircularDependencyRateOf | Circular dependencies are not permitted in RateRule and KineticLaw objects.
|
| ConstraintMathNotBoolean | A Constraint object's <math> must evaluate to a Boolean value.
|
| IncorrectOrderInConstraint | Subobjects inside the Constraint object are not in the prescribed order.
|
| ConstraintNotInXHTMLNamespace | A Constraint's Message subobject must be in the XHTML XML namespace.
|
| ConstraintContainsXMLDecl | XML declarations are not permitted within Constraint's Message objects.
|
| ConstraintContainsDOCTYPE | XML DOCTYPE elements are not permitted within Constraint's Message objects.
|
| InvalidConstraintContent | Invalid content for a Constraint object's Message object.
|
| OneMathElementPerConstraint | A Constraint object may contain one <math> element.
|
| OneMessageElementPerConstraint | A Constraint object can only have one Message subobject.
|
| AllowedAttributesOnConstraint | Invalid attribute found on Constraint object.
|
| NoReactantsOrProducts | Cannot have a reaction with neither reactants nor products.
|
| IncorrectOrderInReaction | Subobjects inside the Reaction object are not in the prescribed order.
|
| EmptyListInReaction | Reaction components, if present, cannot be empty.
|
| InvalidReactantsProductsList | Invalid object found in the list of reactants or products.
|
| InvalidModifiersList | Invalid object found in the list of modifiers.
|
| OneSubElementPerReaction | A Reaction object can only contain one of each allowed type of object.
|
| CompartmentOnReaction | Invalid value for the Reaction 'compartment' attribute.
|
| AllowedAttributesOnReaction | Invalid attribute for a Reaction object.
|
| InvalidSpeciesReference | Invalid 'species' attribute value in SpeciesReference object.
|
| RepeatedRule20611 | |
| BothStoichiometryAndMath | The 'stoichiometry' attribute and StoichiometryMath subobject are mutually exclusive.
|
| AllowedAttributesOnSpeciesReference | Invalid attribute found on the SpeciesReference object.
|
| AllowedAttributesOnModifier | Invalid attribute found on the ModifierSpeciesReference object.
|
| UndeclaredSpeciesRef | Unknown species referenced in the kinetic law <math> formula.
|
| IncorrectOrderInKineticLaw | Incorrect ordering of components in the KineticLaw object.
|
| EmptyListInKineticLaw | The list of parameters, if present, cannot be empty.
|
| NonConstantLocalParameter | Parameters local to a KineticLaw object must have a 'constant' attribute value of 'true'.
|
| SubsUnitsNoLongerValid | Attribute 'substanceUnits' is not supported in this Level+Version of SBML.
|
| TimeUnitsNoLongerValid | Attribute 'timeUnits' is not supported in this Level+Version of SBML.
|
| OneListOfPerKineticLaw | Only one ListOfLocalParameters object is permitted within a KineticLaw object.
|
| OnlyLocalParamsInListOfLocalParams | Only LocalParameter, Notes and Annotation objects are allowed in ListOfLocalParameter objects.
|
| AllowedAttributesOnListOfLocalParam | Invalid attribute found on the ListOfLocalParameters object.
|
| OneMathPerKineticLaw | Only one <math> element is allowed in a KineticLaw object.
|
| UndeclaredSpeciesInStoichMath | Unknown species referenced in the StoichiometryMath object's <math> formula.
|
| AllowedAttributesOnKineticLaw | Invalid attribute found on the KineticLaw object.
|
| AllowedAttributesOnListOfSpeciesRef | Invalid attribute found on the ListOfSpeciesReferences object.
|
| AllowedAttributesOnListOfMods | Invalid attribute found on the ListOfModifiers object.
|
| L3V2FastDeprecated | Fast attribute deprecated.
|
| AllowedAttributesOnLocalParameter | Invalid attribute found on the LocalParameter object.
|
| LocalParameterShadowsSpecies | Invalid attribute found on the LocalParameter object.
|
| MissingTriggerInEvent | The Event object is missing a Trigger subobject.
|
| TriggerMathNotBoolean | A Trigger object's <math> expression must evaluate to a Boolean value.
|
| MissingEventAssignment | The Event object is missing an EventAssignment subobject.
|
| TimeUnitsEvent | Units referenced by 'timeUnits' attribute are not compatible with units of time.
|
| IncorrectOrderInEvent | Incorrect ordering of components in Event object.
|
| ValuesFromTriggerTimeNeedDelay | Attribute 'useValuesFromTriggerTime'='false', but the Event object does not define a delay.
|
| DelayNeedsValuesFromTriggerTime | The use of a Delay object requires the Event attribute 'useValuesFromTriggerTime'.
|
| OneMathPerTrigger | A Trigger object may have one <math> element.
|
| OneMathPerDelay | A Delay object may have one <math> element.
|
| InvalidEventAssignmentVariable | Invalid 'variable' attribute value in Event object.
|
| EventAssignmentForConstantEntity | An EventAssignment object cannot assign to a component having attribute 'constant'='true'.
|
| OneMathPerEventAssignment | An EventAssignment object may have one <math> element.
|
| AllowedAttributesOnEventAssignment | Invalid attribute found on the EventAssignment object.
|
| OnlyOneDelayPerEvent | An Event object can only have one Delay subobject.
|
| OneListOfEventAssignmentsPerEvent | An Event object can only have one ListOfEventAssignments subobject.
|
| OnlyEventAssignInListOfEventAssign | Only EventAssignment, Notes and Annotation objects are allowed in ListOfEventAssignments.
|
| AllowedAttributesOnListOfEventAssign | Invalid attribute found on the ListOfEventAssignments object.
|
| AllowedAttributesOnEvent | Invalid attribute found on the Event object.
|
| AllowedAttributesOnTrigger | Invalid attribute found on the Trigger object.
|
| AllowedAttributesOnDelay | Invalid attribute found on the Delay object.
|
| PersistentNotBoolean | The Trigger attribute 'persistent' must evaluate to a Boolean value.
|
| InitialValueNotBoolean | The Trigger attribute 'initialValue' must evaluate to a Boolean value.
|
| OnlyOnePriorityPerEvent | An Event object can only have one Priority subobject.
|
| OneMathPerPriority | A Priority object may have one <math> element.
|
| AllowedAttributesOnPriority | Invalid attribute found on the Priority object.
|
| GeneralWarningNotSpecified | Unknown error.
|
| CompartmentShouldHaveSize | It's best to define a size for every compartment in a model.
|
| SpeciesShouldHaveValue | It's best to define an initial amount or initial concentration for every species in a model.
|
| ParameterShouldHaveUnits | It's best to declare units for every parameter in a model.
|
| ParameterShouldHaveValue | It's best to declare values for every parameter in a model.
|
| LocalParameterShadowsId | Local parameters defined within a kinetic law shadow global object symbols.
|
| LibSBMLAdditionalCodesLowerBound | Lower boundary of libSBML-specific diagnostic codes.
|
| CannotConvertToL1V1 | Cannot convert to SBML Level 1 Version 1.
|
| NoEventsInL1 | SBML Level 1 does not support events.
|
| NoFunctionDefinitionsInL1 | SBML Level 1 does not support function definitions.
|
| NoConstraintsInL1 | SBML Level 1 does not support constraints.
|
| NoInitialAssignmentsInL1 | SBML Level 1 does not support initial assignments.
|
| NoSpeciesTypesInL1 | SBML Level 1 does not support species types.
|
| NoCompartmentTypeInL1 | SBML Level 1 does not support compartment types.
|
| NoNon3DCompartmentsInL1 | SBML Level 1 only supports three-dimensional compartments.
|
| NoFancyStoichiometryMathInL1 | SBML Level 1 does not support non-integer nor non-rational stoichiometry formulas.
|
| NoNonIntegerStoichiometryInL1 | SBML Level 1 does not support non-integer 'stoichiometry' attribute values.
|
| NoUnitMultipliersOrOffsetsInL1 | SBML Level 1 does not support multipliers or offsets in unit definitions.
|
| SpeciesCompartmentRequiredInL1 | In SBML Level 1, a value for 'compartment' is mandatory in species definitions.
|
| NoSpeciesSpatialSizeUnitsInL1 | SBML Level 1 does not support species 'spatialSizeUnits' settings.
|
| NoSBOTermsInL1 | SBML Level 1 does not support the 'sboTerm' attribute.
|
| StrictUnitsRequiredInL1 | SBML Level 1 requires strict unit consistency.
|
| ConversionFactorNotInL1 | SBML Level 1 does not support the 'conversionFactor' attribute.
|
| CompartmentNotOnL1Reaction | SBML Level 1 does not support the 'compartment' attribute on Reaction objects.
|
| ExtentUnitsNotSubstance | Units of extent must be compatible with units of substance.
|
| GlobalUnitsNotDeclared | Global units must be refer to unit kind or unitDefinition.
|
| HasOnlySubstanceUnitsNotinL1 | The concept of hasOnlySubstanceUnits was not available in SBML Level 1.
|
| AvogadroNotSupported | Avogadro not supported in Levels 2 and 1.
|
| NoConstraintsInL2v1 | SBML Level 2 Version 1 does not support Constraint objects.
|
| NoInitialAssignmentsInL2v1 | SBML Level 2 Version 1 does not support InitialAssignment objects.
|
| NoSpeciesTypeInL2v1 | SBML Level 2 Version 1 does not support SpeciesType objects.
|
| NoCompartmentTypeInL2v1 | SBML Level 2 Version 1 does not support CompartmentType objects.
|
| NoSBOTermsInL2v1 | SBML Level 2 Version 1 does not support the 'sboTerm' attribute.
|
| NoIdOnSpeciesReferenceInL2v1 | SBML Level 2 Version 1 does not support the 'id' attribute on SpeciesReference objects.
|
| NoDelayedEventAssignmentInL2v1 | SBML Level 2 Version 1 does not support the 'useValuesFromTriggerTime' attribute.
|
| StrictUnitsRequiredInL2v1 | SBML Level 2 Version 1 requires strict unit consistency.
|
| IntegerSpatialDimensions | SBML Level 2 Version 1 requires that compartments have spatial dimensions of 0-3.
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| StoichiometryMathNotYetSupported | Conversion to StoichiometryMath objects not yet supported.
|
| PriorityLostFromL3 | SBML Level 2 Version 1 does not support priorities on Event objects.
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| NonPersistentNotSupported | SBML Level 2 Version 1 does not support the 'persistent' attribute on Trigger objects.
|
| InitialValueFalseEventNotSupported | SBML Level 2 Version 1 does not support the 'initialValue' attribute on Trigger objects.
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| SBOTermNotUniversalInL2v2 | The 'sboTerm' attribute is invalid for this component in SBML Level 2 Version 2.
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| NoUnitOffsetInL2v2 | This Level+Version of SBML does not support the 'offset' attribute on Unit objects.
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| NoKineticLawTimeUnitsInL2v2 | This Level+Version of SBML does not support the 'timeUnits' attribute on KineticLaw objects.
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| NoKineticLawSubstanceUnitsInL2v2 | This Level+Version of SBML does not support the 'substanceUnits' attribute on KineticLaw objects.
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| NoDelayedEventAssignmentInL2v2 | This Level+Version of SBML does not support the 'useValuesFromTriggerTime' attribute.
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| ModelSBOBranchChangedBeyondL2v2 | The allowable 'sboTerm' attribute values for Model objects differ for this SBML Level+Version.
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| StrictUnitsRequiredInL2v2 | SBML Level 2 Version 2 requires strict unit consistency.
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| StrictSBORequiredInL2v2 | SBML Level 2 Version 2 requires strict SBO term consistency.
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| DuplicateAnnotationInvalidInL2v2 | Duplicate top-level annotations are invalid in SBML Level 2 Version 2.
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| NoUnitOffsetInL2v3 | This Level+Version of SBML does not support the 'offset' attribute on Unit objects.
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| NoKineticLawTimeUnitsInL2v3 | This Level+Version of SBML does not support the 'timeUnits' attribute on KineticLaw objects.
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| NoKineticLawSubstanceUnitsInL2v3 | This Level+Version of SBML does not support the 'substanceUnits' attribute on KineticLaw objects.
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| NoSpeciesSpatialSizeUnitsInL2v3 | This Level+Version of SBML does not support the 'spatialSizeUnit' attribute on Species objects.
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| NoEventTimeUnitsInL2v3 | This Level+Version of SBML does not support the 'timeUnits' attribute on Event objects.
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| NoDelayedEventAssignmentInL2v3 | This Level+Version of SBML does not support the 'useValuesFromTriggerTime' attribute.
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| ModelSBOBranchChangedBeyondL2v3 | The allowable 'sboTerm' attribute values for Model objects differ for this SBML Level+Version.
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| StrictUnitsRequiredInL2v3 | SBML Level 2 Version 3 requires strict unit consistency.
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| StrictSBORequiredInL2v3 | SBML Level 2 Version 3 requires strict SBO term consistency.
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| DuplicateAnnotationInvalidInL2v3 | Duplicate top-level annotations are invalid in SBML Level 2 Version 3.
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| NoUnitOffsetInL2v4 | This Level+Version of SBML does not support the 'offset' attribute on Unit objects.
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| NoKineticLawTimeUnitsInL2v4 | This Level+Version of SBML does not support the 'timeUnits' attribute on KineticLaw objects.
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| NoKineticLawSubstanceUnitsInL2v4 | This Level+Version of SBML does not support the 'substanceUnits' attribute on KineticLaw objects.
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| NoSpeciesSpatialSizeUnitsInL2v4 | This Level+Version of SBML does not support the 'spatialSizeUnit' attribute on Species objects.
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| NoEventTimeUnitsInL2v4 | This Level+Version of SBML does not support the 'timeUnits' attribute on Event objects.
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| ModelSBOBranchChangedInL2v4 | The allowable 'sboTerm' attribute values for Model objects differ for this SBML Level+Version.
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| DuplicateAnnotationInvalidInL2v4 | Duplicate top-level annotations are invalid in SBML Level 2 Version 4.
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| NoSpeciesTypeInL3v1 | SBML Level 3 Version 1 does not support SpeciesType objects.
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| NoCompartmentTypeInL3v1 | SBML Level 3 Version 1 does not support CompartmentType objects.
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| NoUnitOffsetInL3v1 | This Level+Version of SBML does not support the 'offset' attribute on Unit objects.
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| NoKineticLawTimeUnitsInL3v1 | This Level+Version of SBML does not support the 'timeUnits' attribute on KineticLaw objects.
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| NoKineticLawSubstanceUnitsInL3v1 | This Level+Version of SBML does not support the 'substanceUnits' attribute on KineticLaw objects.
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| NoSpeciesSpatialSizeUnitsInL3v1 | This Level+Version of SBML does not support the 'spatialSizeUnit' attribute on Species objects.
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| NoEventTimeUnitsInL3v1 | This Level+Version of SBML does not support the 'timeUnits' attribute on Event objects.
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| ModelSBOBranchChangedInL3v1 | The allowable 'sboTerm' attribute values for Model objects differ for this SBML Level+Version.
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| DuplicateAnnotationInvalidInL3v1 | Duplicate top-level annotations are invalid in SBML Level 3 Version 1.
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| NoCompartmentOutsideInL3v1 | This Level+Version of SBML does not support the 'outside' attribute on Compartment objects.
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| NoStoichiometryMathInL3v1 | This Level+Version of SBML does not support the StoichiometryMath object.
|
| DoubleExponentNotSupported | Exponent of type double not supported in Levels 2 and 1.
|
| MathMLElementNotSupported | This MathML element is only permitted in L3V2.
|
| EmptyListOfElementNotSupported | Empty 'ListOf' element is only permitted in L3V2.
|
| MissingMathElementNotSupported | Missing <math> element is only permitted in L3V2.
|
| MissingTriggerElementNotSupported | missing <trigger> element is only permitted in L3V2.
|
| BooleanNumericDiscrepancy | Interchange of Boolean and numeric values only permitted in L3V2.
|
| IdNameSBaseInL3V2 | Conversion will lose attributes only available in L3V2 and higher.
|
| MissingParticipantsNotSupported | Omission of both <listOfReactants> and <listOfProducts> is only valid in L3V2.
|
| ConvertibleMathInitialAssignment | Some L3V2-specific MathML elements are not permitted in InitialAssignment objects.
|
| FastReactionsNotSupported | Conversion of reactions employing the 'fast' attribute is not supported.
|
| SpeciesRefIdInMathMLNotSupported | This MathML element is only permitted in L3V2.
|
| InvalidSBMLLevelVersion | Unknown Level+Version combination of SBML.
|
| InvalidPackageLevelVersion | Invalid package Level+Version combination of SBML.
|
| AnnotationNotesNotAllowedLevel1 | Annotation objects on the SBML container element are not permitted in SBML Level 1.
|
| InvalidRuleOrdering | Invalid ordering of rules.
|
| RequiredPackagePresent | The SBML document requires an SBML Level 3 package unavailable in this software.
|
| UnrequiredPackagePresent | The SBML document uses an SBML Level 3 package unavailable in this software.
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| PackageRequiredShouldBeFalse | This package expects required to be false.
|
| SubsUnitsAllowedInKL | Disallowed value for attribute 'substanceUnits' on KineticLaw object.
|
| TimeUnitsAllowedInKL | Disallowed value for attribute 'timeUnits' on KineticLaw object.
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| FormulaInLevel1KL | Only predefined functions are allowed in SBML Level 1 formulas.
|
| L3SubstanceUnitsOnModel | Invalid 'substanceUnits' attribute value.
|
| StoichiometryMathMissingMath | The <stoichiometryMath> element must contain a <math> element.
|
| TimeUnitsRemoved | This Level+Version of SBML does not support the 'timeUnits' attribute on Event objects.
|
| BadMathML | Invalid MathML expression.
|
| FailedMathMLReadOfDouble | Missing or invalid floating-point number in MathML expression.
|
| FailedMathMLReadOfInteger | Missing or invalid integer in MathML expression.
|
| FailedMathMLReadOfExponential | Missing or invalid exponential expression in MathML.
|
| FailedMathMLReadOfRational | Missing or invalid rational expression in MathML.
|
| BadMathMLNodeType | Invalid MathML element.
|
| InvalidMathMLAttribute | Invalid MathML attribute.
|
| NoTimeSymbolInFunctionDef | Use of <csymbol> for 'time' not allowed within FunctionDefinition objects.
|
| NoBodyInFunctionDef | There must be a <lambda> body within the <math> element of a FunctionDefinition object.
|
| DanglingUnitSIdRef | Units must refer to valid unit or unitDefinition.
|
| RDFMissingAboutTag | RDF missing the <about> tag.
|
| RDFEmptyAboutTag | RDF empty <about> tag.
|
| RDFAboutTagNotMetaid | RDF <about> tag is not metaid.
|
| RDFNotCompleteModelHistory | RDF does not contain valid ModelHistory.
|
| RDFNotModelHistory | RDF does not result in a ModelHistory.
|
| AnnotationNotElement | Annotation must contain element.
|
| NestedAnnotationNotAllowed | Nested annotations not allowed.
|
| InconsistentArgUnitsWarnings | This is an internal error that reverts to 10501.
|
| InconsistentPowerUnitsWarnings | This is an internal error that reverts to 10501.
|
| InconsistentExponUnitsWarnings | This is an internal error that reverts to 10501.
|
| UndeclaredUnits | Missing unit declarations on parameters or literal numbers in expression.
|
| UndeclaredTimeUnitsL3 | Unable to verify consistency of units: the unit of time has not been declared.
|
| UndeclaredExtentUnitsL3 | Unable to verify consistency of units: the units of reaction extent have not been declared.
|
| UndeclaredObjectUnitsL3 | Unable to verify consistency of units: encountered a model entity with no declared units.
|
| CannotVerifyUnitsObjectNoMath | Unable to verify consistency of units: encountered an object with no <math> element.
|
| UnrecognisedSBOTerm | Unrecognized 'sboTerm' attribute value.
|
| ObseleteSBOTerm | Obsolete 'sboTerm' attribute value.
|
| IncorrectCompartmentSpatialDimensions | In SBML Level 1, only three-dimensional compartments are allowed.
|
| CompartmentTypeNotValidAttribute | CompartmentType objects are not available in this Level+Version of SBML.
|
| ConstantNotValidAttribute | This Level+Version of SBML does not support the 'constant' attribute on this component.
|
| MetaIdNotValidAttribute | Attribute 'metaid' is not available in SBML Level 1.
|
| SBOTermNotValidAttributeBeforeL2V3 | The 'sboTerm' attribute is not available on this component before SBML Level 2 Version 3.
|
| InvalidL1CompartmentUnits | Invalid units for a compartment in SBML Level 1.
|
| L1V1CompartmentVolumeReqd | In SBML Level 1, a compartment's volume must be specified.
|
| CompartmentTypeNotValidComponent | CompartmentType objects are not available in this Level+Version of SBML.
|
| ConstraintNotValidComponent | Constraint objects are not available in this Level+Version of SBML.
|
| EventNotValidComponent | Event objects are not available in this Level+Version of SBML.
|
| SBOTermNotValidAttributeBeforeL2V2 | The 'sboTerm' attribute is invalid for this component before Level 2 Version 2.
|
| FuncDefNotValidComponent | FunctionDefinition objects are not available in this Level+Version of SBML.
|
| InitialAssignNotValidComponent | InitialAssignment objects are not available in this Level+Version of SBML.
|
| VariableNotValidAttribute | Attribute 'variable' is not available on this component in this Level+Version of SBML.
|
| UnitsNotValidAttribute | Attribute 'units' is not available on this component in this Level+Version of SBML.
|
| ConstantSpeciesNotValidAttribute | Attribute 'constant' is not available on Species objects in SBML Level 1.
|
| SpatialSizeUnitsNotValidAttribute | Attribute 'spatialSizeUnits' is not available on Species objects in SBML Level 1.
|
| SpeciesTypeNotValidAttribute | Attribute 'speciesType' is not available on Species objects in SBML Level 1.
|
| HasOnlySubsUnitsNotValidAttribute | Attribute 'hasOnlySubstanceUnits' is not available on Species objects in SBML Level 1.
|
| IdNotValidAttribute | Attribute 'id' is not available on SpeciesReference objects in SBML Level 1.
|
| NameNotValidAttribute | Attribute 'name' is not available on SpeciesReference objects in SBML Level 1.
|
| SpeciesTypeNotValidComponent | The SpeciesType object is not supported in SBML Level 1.
|
| StoichiometryMathNotValidComponent | The StoichiometryMath object is not supported in SBML Level 1.
|
| MultiplierNotValidAttribute | Attribute 'multiplier' on Unit objects is not supported in SBML Level 1.
|
| OffsetNotValidAttribute | Attribute 'offset' on Unit objects is only available in SBML Level 2 Version 1.
|
| L3SpatialDimensionsUnset | No value given for 'spatialDimensions' attribute; assuming a value of 3.
|
| OperationInterrupted | Operation was interrupted by the user.
|
| UnknownCoreAttribute | Encountered an unknown attribute in the SBML Core namespace.
|
| UnknownPackageAttribute | Encountered an unknown attribute in an SBML Level 3 package namespace.
|
| PackageConversionNotSupported | Conversion of SBML Level 3 package constructs is not yet supported.
|
| InvalidTargetLevelVersion | The requested SBML Level/Version combination is not known to exist.
|
| L3NotSupported | SBML Level 3 is not yet supported.
|
| SBMLCodesUpperBound | Upper boundary of libSBML-specific diagnostic codes.
|