elastix::DeformationFieldTransform< TElastix > Class Template Reference

#include <elxDeformationFieldTransform.h>

Inheritance diagram for elastix::DeformationFieldTransform< TElastix >:

Collaboration diagram for elastix::DeformationFieldTransform< TElastix >:

Public Types
typedef Superclass2::CombinationTransformType	CombinationTransformType
typedef Superclass2::ConfigurationPointer	ConfigurationPointer
typedef Superclass2::ConfigurationType	ConfigurationType
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass2::CoordRepType	CoordRepType
typedef DeformationFieldInterpolatingTransformType::Pointer	DeformationFieldInterpolatingTransformPointer
typedef DeformationFieldInterpolatingTransform < typename elx::TransformBase < TElastix >::CoordRepType, elx::TransformBase< TElastix > ::FixedImageDimension, float >	DeformationFieldInterpolatingTransformType
typedef DeformationFieldInterpolatingTransformType::DeformationFieldType	DeformationFieldType
typedef DeformationFieldInterpolatingTransformType::DeformationFieldVectorType	DeformationFieldVectorType
typedef Superclass2::ElastixPointer	ElastixPointer
typedef Superclass2::ElastixType	ElastixType
typedef Superclass2::FixedImageType	FixedImageType
typedef Superclass1::InputCovariantVectorType	InputCovariantVectorType
typedef Superclass1::InputPointType	InputPointType
typedef Superclass1::InputVectorType	InputVectorType
typedef Superclass1::InputVnlVectorType	InputVnlVectorType
typedef Superclass2::ITKBaseType	ITKBaseType
typedef Superclass1::JacobianType	JacobianType
typedef Superclass2::MovingImageType	MovingImageType
typedef Superclass1::OutputCovariantVectorType	OutputCovariantVectorType
typedef Superclass1::OutputPointType	OutputPointType
typedef Superclass1::OutputVectorType	OutputVectorType
typedef Superclass1::OutputVnlVectorType	OutputVnlVectorType
typedef Superclass1::ParametersType	ParametersType
typedef SmartPointer< Self >	Pointer
typedef Superclass2::RegistrationPointer	RegistrationPointer
typedef Superclass2::RegistrationType	RegistrationType
typedef Superclass1::ScalarType	ScalarType
typedef DeformationFieldTransform	Self
typedef AdvancedCombinationTransform < typename elx::TransformBase < TElastix >::CoordRepType, elx::TransformBase< TElastix > ::FixedImageDimension >	Superclass1
typedef elx::TransformBase < TElastix >	Superclass2
Public Types inherited from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
typedef SmartPointer< const Self >	ConstPointer
typedef CurrentTransformType::Pointer	CurrentTransformPointer
typedef Superclass	CurrentTransformType
typedef const JacobianType &(Self::*	GetJacobianFunctionPointer )(const InputPointType &) const
typedef void(Self::*	GetJacobianOfSpatialHessianFunctionPointer )(const InputPointType &, JacobianOfSpatialHessianType &, NonZeroJacobianIndicesType &) const
typedef void(Self::*	GetJacobianOfSpatialHessianFunctionPointer2 )(const InputPointType &, SpatialHessianType &, JacobianOfSpatialHessianType &, NonZeroJacobianIndicesType &) const
typedef void(Self::*	GetJacobianOfSpatialJacobianFunctionPointer )(const InputPointType &, JacobianOfSpatialJacobianType &, NonZeroJacobianIndicesType &) const
typedef void(Self::*	GetJacobianOfSpatialJacobianFunctionPointer2 )(const InputPointType &, SpatialJacobianType &, JacobianOfSpatialJacobianType &, NonZeroJacobianIndicesType &) const
typedef void(Self::*	GetSparseJacobianFunctionPointer )(const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const
typedef void(Self::*	GetSpatialHessianFunctionPointer )(const InputPointType &, SpatialHessianType &) const
typedef void(Self::*	GetSpatialJacobianFunctionPointer )(const InputPointType &, SpatialJacobianType &) const
typedef InitialTransformType::ConstPointer	InitialTransformConstPointer
typedef InitialTransformType::Pointer	InitialTransformPointer
typedef Superclass	InitialTransformType
typedef Superclass::InputCovariantVectorType	InputCovariantVectorType
typedef Superclass::InputPointType	InputPointType
typedef Superclass::InputVectorType	InputVectorType
typedef Superclass::InputVnlVectorType	InputVnlVectorType
typedef Superclass::InternalMatrixType	InternalMatrixType
typedef Superclass::JacobianOfSpatialHessianType	JacobianOfSpatialHessianType
typedef Superclass::JacobianOfSpatialJacobianType	JacobianOfSpatialJacobianType
typedef Superclass::JacobianType	JacobianType
typedef Superclass::NonZeroJacobianIndicesType	NonZeroJacobianIndicesType
typedef Superclass::OutputCovariantVectorType	OutputCovariantVectorType
typedef Superclass::OutputPointType	OutputPointType
typedef Superclass::OutputVectorType	OutputVectorType
typedef Superclass::OutputVnlVectorType	OutputVnlVectorType
typedef Superclass::ParametersType	ParametersType
typedef SmartPointer< Self >	Pointer
typedef Superclass::ScalarType	ScalarType
typedef AdvancedCombinationTransform	Self
typedef Superclass::SpatialHessianType	SpatialHessianType
typedef Superclass::SpatialJacobianType	SpatialJacobianType
typedef AdvancedTransform < elx::TransformBase< TElastix > ::CoordRepType, NDimensions, NDimensions >	Superclass
typedef OutputPointType(Self::*	TransformPointFunctionPointer )(const InputPointType &) const
Public Types inherited from itk::AdvancedTransform< elx::TransformBase< TElastix >::CoordRepType, NDimensions, NDimensions >
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::InputCovariantVectorType	InputCovariantVectorType
typedef Superclass::InputPointType	InputPointType
typedef Superclass::InputVectorType	InputVectorType
typedef Superclass::InputVnlVectorType	InputVnlVectorType
typedef SpatialJacobianType::InternalMatrixType	InternalMatrixType
typedef std::vector < SpatialHessianType >	JacobianOfSpatialHessianType
typedef std::vector < SpatialJacobianType >	JacobianOfSpatialJacobianType
typedef Superclass::JacobianType	JacobianType
typedef std::vector< unsigned long >	NonZeroJacobianIndicesType
typedef Superclass::OutputCovariantVectorType	OutputCovariantVectorType
typedef Superclass::OutputPointType	OutputPointType
typedef Superclass::OutputVectorType	OutputVectorType
typedef Superclass::OutputVnlVectorType	OutputVnlVectorType
typedef Superclass::ParametersType	ParametersType
typedef SmartPointer< Self >	Pointer
typedef Superclass::ScalarType	ScalarType
typedef AdvancedTransform	Self
typedef FixedArray< Matrix < ScalarType, InputSpaceDimension, InputSpaceDimension > , OutputSpaceDimension >	SpatialHessianType
typedef Matrix< ScalarType, OutputSpaceDimension, InputSpaceDimension >	SpatialJacobianType
typedef Transform < elx::TransformBase< TElastix > ::CoordRepType, NInputDimensions, NOutputDimensions >	Superclass
Public Types inherited from elastix::TransformBase< TElastix >
typedef itk::AdvancedCombinationTransform < CoordRepType, itkGetStaticConstMacro(FixedImageDimension) >	CombinationTransformType
typedef ConfigurationType::CommandLineArgumentMapType	CommandLineArgumentMapType
typedef ConfigurationType::CommandLineEntryType	CommandLineEntryType
typedef ComponentDatabase	ComponentDatabaseType
typedef ComponentDatabaseType::ComponentDescriptionType	ComponentDescriptionType
typedef Superclass::ConfigurationPointer	ConfigurationPointer
typedef Superclass::ConfigurationType	ConfigurationType
typedef ElastixType::CoordRepType	CoordRepType
typedef Superclass::ElastixPointer	ElastixPointer
typedef Superclass::ElastixType	ElastixType
typedef ElastixType::FixedImageType	FixedImageType
typedef CombinationTransformType::InitialTransformType	InitialTransformType
typedef ITKBaseType::InputPointType	InputPointType
typedef itk::AdvancedTransform < CoordRepType, itkGetStaticConstMacro(FixedImageDimension), itkGetStaticConstMacro(MovingImageDimension) >	ITKBaseType
typedef RegistrationType::ITKBaseType	ITKRegistrationType
typedef ElastixType::MovingImageType	MovingImageType
typedef itk::Object	ObjectType
typedef ITKRegistrationType::OptimizerType	OptimizerType
typedef ITKBaseType::OutputPointType	OutputPointType
typedef ITKBaseType::ParametersType	ParametersType
typedef elx::ProgressCommand	ProgressCommandType
typedef ComponentDatabase::PtrToCreator	PtrToCreator
typedef Superclass::RegistrationPointer	RegistrationPointer
typedef Superclass::RegistrationType	RegistrationType
typedef OptimizerType::ScalesType	ScalesType
typedef TransformBase	Self
typedef BaseComponentSE< TElastix >	Superclass
typedef ParametersType::ValueType	ValueType
Public Types inherited from elastix::BaseComponentSE< TElastix >
typedef ElastixType::ConfigurationPointer	ConfigurationPointer
typedef ElastixType::ConfigurationType	ConfigurationType
typedef ElastixType::Pointer	ElastixPointer
typedef TElastix	ElastixType
typedef RegistrationType *	RegistrationPointer
typedef ElastixType::RegistrationBaseType	RegistrationType
typedef BaseComponentSE	Self
typedef BaseComponent	Superclass

Public Member Functions
	elxClassNameMacro ("DeformationFieldTransform")
virtual const char *	GetClassName () const
	itkStaticConstMacro (SpaceDimension, unsigned int, Superclass2::FixedImageDimension)
virtual void	ReadFromFile (void)
virtual void	WriteToFile (const ParametersType &param) const
Public Member Functions inherited from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
virtual CurrentTransformType *	GetCurrentTransform ()
virtual const ParametersType &	GetFixedParameters (void) const
virtual bool	GetHasNonZeroSpatialHessian (void) const
virtual const InitialTransformType *	GetInitialTransform ()
virtual bool	GetInverse (Self *inverse) const
virtual const JacobianType &	GetJacobian (const InputPointType &point) const
virtual void	GetJacobian (const InputPointType &ipp, JacobianType &j, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
virtual void	GetJacobianOfSpatialHessian (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
virtual void	GetJacobianOfSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
virtual void	GetJacobianOfSpatialJacobian (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
virtual void	GetJacobianOfSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
virtual unsigned long	GetNumberOfNonZeroJacobianIndices (void) const
virtual unsigned int	GetNumberOfParameters (void) const
virtual const ParametersType &	GetParameters (void) const
virtual void	GetSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh) const
virtual void	GetSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj) const
virtual bool	GetUseAddition () const
virtual bool	GetUseComposition () const
virtual bool	HasNonZeroJacobianOfSpatialHessian (void) const
virtual bool	IsLinear (void) const
	itkStaticConstMacro (SpaceDimension, unsigned int, NDimensions)
virtual void	SetCurrentTransform (CurrentTransformType *_arg)
virtual void	SetFixedParameters (const ParametersType &fixedParam)
virtual void	SetInitialTransform (const InitialTransformType *_arg)
virtual void	SetParameters (const ParametersType &param)
virtual void	SetParametersByValue (const ParametersType &param)
virtual void	SetUseAddition (bool _arg)
virtual void	SetUseComposition (bool _arg)
virtual OutputPointType	TransformPoint (const InputPointType &point) const
Public Member Functions inherited from itk::AdvancedTransform< elx::TransformBase< TElastix >::CoordRepType, NDimensions, NDimensions >
virtual bool	GetHasNonZeroJacobianOfSpatialHessian () const
virtual void	GetJacobian (const InputPointType &ipp, JacobianType &j, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
virtual void	GetJacobianOfSpatialHessian (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
virtual void	GetJacobianOfSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
virtual void	GetJacobianOfSpatialJacobian (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
virtual void	GetJacobianOfSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
virtual void	GetSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh) const
virtual void	GetSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj) const
	itkStaticConstMacro (InputSpaceDimension, unsigned int, NInputDimensions)
	itkStaticConstMacro (OutputSpaceDimension, unsigned int, NOutputDimensions)
Public Member Functions inherited from elastix::TransformBase< TElastix >
virtual void	AfterRegistrationBase (void)
virtual int	BeforeAllBase (void)
virtual int	BeforeAllTransformix (void)
virtual void	BeforeRegistrationBase (void)
virtual void	ComputeDeterminantOfSpatialJacobian (void) const
virtual void	ComputeSpatialJacobian (void) const
virtual const CombinationTransformType *	GetAsCombinationTransform (void) const
virtual CombinationTransformType *	GetAsCombinationTransform (void)
virtual ITKBaseType *	GetAsITKBaseType (void)
virtual const ITKBaseType *	GetAsITKBaseType (void) const
virtual const InitialTransformType *	GetInitialTransform (void) const
virtual const char *	GetTransformParametersFileName () const
	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
virtual void	ReadInitialTransformFromFile (const char *transformParameterFileName)
virtual void	SetFinalParameters (void)
virtual void	SetInitialTransform (InitialTransformType *_arg)
virtual void	SetReadWriteTransformParameters (const bool _arg)
virtual void	SetTransformParametersFileName (const char *filename)
virtual void	TransformPoints (void) const
virtual void	TransformPointsAllPoints (void) const
virtual void	TransformPointsSomePoints (const std::string filename) const
virtual void	TransformPointsSomePointsVTK (const std::string filename) const
virtual void	WriteToFile (void) const
Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
virtual ConfigurationType *	GetConfiguration (void) const
virtual ElastixType *	GetElastix (void) const
virtual RegistrationPointer	GetRegistration (void) const
virtual void	SetConfiguration (ConfigurationType *_arg)
virtual void	SetElastix (ElastixType *_arg)
Public Member Functions inherited from elastix::BaseComponent
virtual void	AfterEachIteration (void)
virtual void	AfterEachIterationBase (void)
virtual void	AfterEachResolution (void)
virtual void	AfterEachResolutionBase (void)
virtual void	AfterRegistration (void)
virtual int	BeforeAll (void)
virtual void	BeforeEachResolution (void)
virtual void	BeforeEachResolutionBase (void)
virtual void	BeforeRegistration (void)
virtual const char *	elxGetClassName (void) const
virtual const char *	GetComponentLabel (void) const
virtual void	SetComponentLabel (const char *label, unsigned int idx)

Static Public Member Functions
static Pointer	New ()
Static Public Member Functions inherited from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
static Pointer	New ()
Static Public Member Functions inherited from itk::AdvancedTransform< elx::TransformBase< TElastix >::CoordRepType, NDimensions, NDimensions >
static Pointer	New ()

Protected Member Functions
	DeformationFieldTransform ()
virtual	~DeformationFieldTransform ()
Protected Member Functions inherited from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
	AdvancedCombinationTransform ()
const JacobianType &	GetJacobianNoCurrentTransform (const InputPointType &point) const
void	GetJacobianNoCurrentTransform (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const
const JacobianType &	GetJacobianNoInitialTransform (const InputPointType &point) const
void	GetJacobianNoInitialTransform (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const
void	GetJacobianOfSpatialHessianNoCurrentTransform (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialHessianNoCurrentTransform (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialHessianNoInitialTransform (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialHessianNoInitialTransform (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialHessianUseAddition (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialHessianUseAddition (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialHessianUseComposition (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
virtual void	GetJacobianOfSpatialHessianUseComposition (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialJacobianNoCurrentTransform (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialJacobianNoCurrentTransform (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialJacobianNoInitialTransform (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialJacobianNoInitialTransform (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialJacobianUseAddition (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialJacobianUseAddition (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialJacobianUseComposition (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialJacobianUseComposition (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
const JacobianType &	GetJacobianUseAddition (const InputPointType &point) const
void	GetJacobianUseAddition (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const
const JacobianType &	GetJacobianUseComposition (const InputPointType &point) const
void	GetJacobianUseComposition (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const
void	GetSpatialHessianNoCurrentTransform (const InputPointType &ipp, SpatialHessianType &sh) const
void	GetSpatialHessianNoInitialTransform (const InputPointType &ipp, SpatialHessianType &sh) const
void	GetSpatialHessianUseAddition (const InputPointType &ipp, SpatialHessianType &sh) const
void	GetSpatialHessianUseComposition (const InputPointType &ipp, SpatialHessianType &sh) const
void	GetSpatialJacobianNoCurrentTransform (const InputPointType &ipp, SpatialJacobianType &sj) const
void	GetSpatialJacobianNoInitialTransform (const InputPointType &ipp, SpatialJacobianType &sj) const
void	GetSpatialJacobianUseAddition (const InputPointType &ipp, SpatialJacobianType &sj) const
void	GetSpatialJacobianUseComposition (const InputPointType &ipp, SpatialJacobianType &sj) const
virtual void	NoCurrentTransformSet (void) const throw (ExceptionObject)
OutputPointType	TransformPointNoCurrentTransform (const InputPointType &point) const
OutputPointType	TransformPointNoInitialTransform (const InputPointType &point) const
OutputPointType	TransformPointUseAddition (const InputPointType &point) const
OutputPointType	TransformPointUseComposition (const InputPointType &point) const
virtual void	UpdateCombinationMethod (void)
virtual	~AdvancedCombinationTransform ()
Protected Member Functions inherited from itk::AdvancedTransform< elx::TransformBase< TElastix >::CoordRepType, NDimensions, NDimensions >
	AdvancedTransform ()
	AdvancedTransform (unsigned int Dimension, unsigned int NumberOfParameters)
virtual	~AdvancedTransform ()
Protected Member Functions inherited from elastix::TransformBase< TElastix >
void	AutomaticScalesEstimation (ScalesType &scales) const
	TransformBase ()
virtual	~TransformBase ()
Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
	BaseComponentSE ()
virtual	~BaseComponentSE ()
Protected Member Functions inherited from elastix::BaseComponent
	BaseComponent ()
virtual	~BaseComponent ()

Private Types
typedef DeformationFieldType::DirectionType	DirectionType

Private Member Functions
	DeformationFieldTransform (const Self &)
void	operator= (const Self &)

Private Attributes
DeformationFieldInterpolatingTransformPointer	m_DeformationFieldInterpolatingTransform
DirectionType	m_OriginalDeformationFieldDirection

Additional Inherited Members
Protected Attributes inherited from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
CurrentTransformPointer	m_CurrentTransform
InitialTransformConstPointer	m_InitialTransform
GetJacobianFunctionPointer	m_SelectedGetJacobianFunction
GetJacobianOfSpatialHessianFunctionPointer	m_SelectedGetJacobianOfSpatialHessianFunction
GetJacobianOfSpatialHessianFunctionPointer2	m_SelectedGetJacobianOfSpatialHessianFunction2
GetJacobianOfSpatialJacobianFunctionPointer	m_SelectedGetJacobianOfSpatialJacobianFunction
GetJacobianOfSpatialJacobianFunctionPointer2	m_SelectedGetJacobianOfSpatialJacobianFunction2
GetSparseJacobianFunctionPointer	m_SelectedGetSparseJacobianFunction
GetSpatialHessianFunctionPointer	m_SelectedGetSpatialHessianFunction
GetSpatialJacobianFunctionPointer	m_SelectedGetSpatialJacobianFunction
TransformPointFunctionPointer	m_SelectedTransformPointFunction
bool	m_UseAddition
bool	m_UseComposition
Protected Attributes inherited from itk::AdvancedTransform< elx::TransformBase< TElastix >::CoordRepType, NDimensions, NDimensions >
bool	m_HasNonZeroJacobianOfSpatialHessian
bool	m_HasNonZeroSpatialHessian
Protected Attributes inherited from elastix::TransformBase< TElastix >
ParametersType	m_FinalParameters
std::string	m_TransformParametersFileName
ParametersType *	m_TransformParametersPointer
Protected Attributes inherited from elastix::BaseComponentSE< TElastix >
ConfigurationPointer	m_Configuration
ElastixPointer	m_Elastix
RegistrationPointer	m_Registration

Detailed Description

template<class TElastix>
class elastix::DeformationFieldTransform< TElastix >

A transform based on a DeformationField.

This transform models the transformation by a deformation vector field. This transform is NOT meant to be used for optimisation. Just use it as an initial transform, or with transformix.

The parameters used in this class are:

Parameters:

Transform: Select this transform as follows:
(Transform "DeformationFieldTransform")

The transform parameters necessary for transformix, additionally defined by this class, are:

Transform Parameters:

DeformationFieldFileName: stores the name of the deformation field.
example: (DeformationFieldFileName "defField.mhd")

DeformationFieldInterpolationOrder: The interpolation order used for interpolating the deformation field:
example: (DeformationFieldInterpolationOrder 0)
The default value is 0. Choose from the allowed values 0 or 1.

See Also

DeformationFieldInterpolatingTransform

Definition at line 54 of file elxDeformationFieldTransform.h.

Member Typedef Documentation

template<class TElastix >

typedef Superclass2::CombinationTransformType elastix::DeformationFieldTransform< TElastix >::CombinationTransformType

Definition at line 129 of file elxDeformationFieldTransform.h.

template<class TElastix >

typedef Superclass2::ConfigurationPointer elastix::DeformationFieldTransform< TElastix >::ConfigurationPointer

Definition at line 122 of file elxDeformationFieldTransform.h.

template<class TElastix >

typedef Superclass2::ConfigurationType elastix::DeformationFieldTransform< TElastix >::ConfigurationType

Definition at line 121 of file elxDeformationFieldTransform.h.

template<class TElastix >

typedef SmartPointer< const Self > elastix::DeformationFieldTransform< TElastix >::ConstPointer

Definition at line 81 of file elxDeformationFieldTransform.h.

template<class TElastix >

typedef Superclass2::CoordRepType elastix::DeformationFieldTransform< TElastix >::CoordRepType

Definition at line 125 of file elxDeformationFieldTransform.h.

template<class TElastix >

typedef DeformationFieldInterpolatingTransformType::Pointer elastix::DeformationFieldTransform< TElastix >::DeformationFieldInterpolatingTransformPointer

Definition at line 116 of file elxDeformationFieldTransform.h.

template<class TElastix >

typedef DeformationFieldInterpolatingTransform< typename elx::TransformBase<TElastix>::CoordRepType, elx::TransformBase<TElastix>::FixedImageDimension, float > elastix::DeformationFieldTransform< TElastix >::DeformationFieldInterpolatingTransformType

The ITK-class that provides most of the functionality, and that is set as the "CurrentTransform" in the CombinationTransform

Definition at line 72 of file elxDeformationFieldTransform.h.

template<class TElastix >

typedef DeformationFieldInterpolatingTransformType::DeformationFieldType elastix::DeformationFieldTransform< TElastix >::DeformationFieldType

Typedef's specific for the DeformationFieldInterpolatingTransform.

Definition at line 112 of file elxDeformationFieldTransform.h.

template<class TElastix >

typedef DeformationFieldInterpolatingTransformType::DeformationFieldVectorType elastix::DeformationFieldTransform< TElastix >::DeformationFieldVectorType

Definition at line 113 of file elxDeformationFieldTransform.h.

template<class TElastix >

typedef DeformationFieldType::DirectionType elastix::DeformationFieldTransform< TElastix >::DirectionType

private

Definition at line 151 of file elxDeformationFieldTransform.h.

template<class TElastix >

typedef Superclass2::ElastixPointer elastix::DeformationFieldTransform< TElastix >::ElastixPointer

Definition at line 120 of file elxDeformationFieldTransform.h.

template<class TElastix >

typedef Superclass2::ElastixType elastix::DeformationFieldTransform< TElastix >::ElastixType

Typedef's from TransformBase.

Definition at line 119 of file elxDeformationFieldTransform.h.

template<class TElastix >

typedef Superclass2::FixedImageType elastix::DeformationFieldTransform< TElastix >::FixedImageType

Definition at line 126 of file elxDeformationFieldTransform.h.

template<class TElastix >

typedef Superclass1::InputCovariantVectorType elastix::DeformationFieldTransform< TElastix >::InputCovariantVectorType

Definition at line 104 of file elxDeformationFieldTransform.h.

template<class TElastix >

typedef Superclass1::InputPointType elastix::DeformationFieldTransform< TElastix >::InputPointType

Definition at line 108 of file elxDeformationFieldTransform.h.

template<class TElastix >

typedef Superclass1::InputVectorType elastix::DeformationFieldTransform< TElastix >::InputVectorType

Definition at line 102 of file elxDeformationFieldTransform.h.

template<class TElastix >

typedef Superclass1::InputVnlVectorType elastix::DeformationFieldTransform< TElastix >::InputVnlVectorType

Definition at line 106 of file elxDeformationFieldTransform.h.

template<class TElastix >

typedef Superclass2::ITKBaseType elastix::DeformationFieldTransform< TElastix >::ITKBaseType

Definition at line 128 of file elxDeformationFieldTransform.h.

template<class TElastix >

typedef Superclass1::JacobianType elastix::DeformationFieldTransform< TElastix >::JacobianType

Definition at line 101 of file elxDeformationFieldTransform.h.

template<class TElastix >

typedef Superclass2::MovingImageType elastix::DeformationFieldTransform< TElastix >::MovingImageType

Definition at line 127 of file elxDeformationFieldTransform.h.

template<class TElastix >

typedef Superclass1::OutputCovariantVectorType elastix::DeformationFieldTransform< TElastix >::OutputCovariantVectorType

Definition at line 105 of file elxDeformationFieldTransform.h.

template<class TElastix >

typedef Superclass1::OutputPointType elastix::DeformationFieldTransform< TElastix >::OutputPointType

Definition at line 109 of file elxDeformationFieldTransform.h.

template<class TElastix >

typedef Superclass1::OutputVectorType elastix::DeformationFieldTransform< TElastix >::OutputVectorType

Definition at line 103 of file elxDeformationFieldTransform.h.

template<class TElastix >

typedef Superclass1::OutputVnlVectorType elastix::DeformationFieldTransform< TElastix >::OutputVnlVectorType

Definition at line 107 of file elxDeformationFieldTransform.h.

template<class TElastix >

typedef Superclass1::ParametersType elastix::DeformationFieldTransform< TElastix >::ParametersType

Definition at line 100 of file elxDeformationFieldTransform.h.

template<class TElastix >

typedef SmartPointer< Self > elastix::DeformationFieldTransform< TElastix >::Pointer

Definition at line 80 of file elxDeformationFieldTransform.h.

template<class TElastix >

typedef Superclass2::RegistrationPointer elastix::DeformationFieldTransform< TElastix >::RegistrationPointer

Definition at line 124 of file elxDeformationFieldTransform.h.

template<class TElastix >

typedef Superclass2::RegistrationType elastix::DeformationFieldTransform< TElastix >::RegistrationType

Definition at line 123 of file elxDeformationFieldTransform.h.

template<class TElastix >

typedef Superclass1::ScalarType elastix::DeformationFieldTransform< TElastix >::ScalarType

Typedefs inherited from the superclass.

Definition at line 99 of file elxDeformationFieldTransform.h.

template<class TElastix >

typedef DeformationFieldTransform elastix::DeformationFieldTransform< TElastix >::Self

Standard ITK-stuff.

Definition at line 65 of file elxDeformationFieldTransform.h.

template<class TElastix >

typedef AdvancedCombinationTransform< typename elx::TransformBase<TElastix>::CoordRepType, elx::TransformBase<TElastix>::FixedImageDimension > elastix::DeformationFieldTransform< TElastix >::Superclass1

Definition at line 76 of file elxDeformationFieldTransform.h.

template<class TElastix >

typedef elx::TransformBase< TElastix > elastix::DeformationFieldTransform< TElastix >::Superclass2

Definition at line 78 of file elxDeformationFieldTransform.h.

Constructor & Destructor Documentation

template<class TElastix >

elastix::DeformationFieldTransform< TElastix >::DeformationFieldTransform ( )

protected

The constructor.

template<class TElastix >

virtual elastix::DeformationFieldTransform< TElastix >::~DeformationFieldTransform ( )

inlineprotectedvirtual

The destructor.

Definition at line 142 of file elxDeformationFieldTransform.h.

template<class TElastix >

elastix::DeformationFieldTransform< TElastix >::DeformationFieldTransform ( const Self &  )

private

The private constructor.

Member Function Documentation

template<class TElastix >

elastix::DeformationFieldTransform< TElastix >::elxClassNameMacro

(

"DeformationFieldTransform< TElastix >"

)

Name of this class. Use this name in the parameter file to select this specific transform.
example: (Transform "DeformationFieldTransform")

template<class TElastix >

virtual const char* elastix::DeformationFieldTransform< TElastix >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from elastix::TransformBase< TElastix >.

template<class TElastix >

elastix::DeformationFieldTransform< TElastix >::itkStaticConstMacro	(	SpaceDimension	,
		unsigned	int,
		Superclass2::FixedImageDimension
	)

Dimension of the domain space.

template<class TElastix >

static Pointer elastix::DeformationFieldTransform< TElastix >::New ( )

static

Method for creation through the object factory.

template<class TElastix >

void elastix::DeformationFieldTransform< TElastix >::operator= ( const Self &  )

private

The private copy constructor.

template<class TElastix >

virtual void elastix::DeformationFieldTransform< TElastix >::ReadFromFile ( void  )

virtual

Function to read transform-parameters from a file.

Reimplemented from elastix::TransformBase< TElastix >.

template<class TElastix >

virtual void elastix::DeformationFieldTransform< TElastix >::WriteToFile ( const ParametersType &  param ) const

virtual

Function to write transform-parameters to a file.

Reimplemented from elastix::TransformBase< TElastix >.

Field Documentation

template<class TElastix >

DeformationFieldInterpolatingTransformPointer elastix::DeformationFieldTransform< TElastix >::m_DeformationFieldInterpolatingTransform

private

The transform that is set as current transform in the CcombinationTransform

Definition at line 155 of file elxDeformationFieldTransform.h.

template<class TElastix >

DirectionType elastix::DeformationFieldTransform< TElastix >::m_OriginalDeformationFieldDirection

private

Original direction cosines; stored to facilitate UseDirectionCosines option.

Definition at line 158 of file elxDeformationFieldTransform.h.