#include <itkTransformRigidityPenaltyTerm.h>

Inheritance diagram for itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >:

Collaboration diagram for itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >:

Public Types
typedef BSplineTransformType::Pointer	BSplineTransformPointer

typedef AdvancedBSplineDeformableTransform < ScalarType, FixedImageDimension, 3 >	BSplineTransformType

typedef ImageRegionIterator < CoefficientImageType >	CoefficientImageIteratorType

typedef CoefficientImageType::Pointer	CoefficientImagePointer

typedef CoefficientImageType::SpacingType	CoefficientImageSpacingType

typedef BSplineTransformType::ImageType	CoefficientImageType

typedef AdvancedCombinationTransform < ScalarType, FixedImageDimension >	CombinationTransformType

typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::CoordinateRepresentationType	CoordinateRepresentationType

typedef Superclass::DerivativeType	DerivativeType

typedef Superclass::DerivativeValueType	DerivativeValueType

typedef DilateFilterType::Pointer	DilateFilterPointer

typedef GrayscaleDilateImageFilter < RigidityImageType, RigidityImageType, StructuringElementType >	DilateFilterType

typedef Superclass::FixedImageConstPointer	FixedImageConstPointer

typedef Superclass::FixedImageMaskPointer	FixedImageMaskPointer

typedef Superclass::FixedImageMaskType	FixedImageMaskType

typedef Superclass::FixedImagePixelType	FixedImagePixelType

typedef Superclass::FixedImagePointer	FixedImagePointer

typedef Superclass::FixedImageRegionType	FixedImageRegionType

typedef Superclass::FixedImageType	FixedImageType

typedef Superclass::GradientImageFilterPointer	GradientImageFilterPointer

typedef Superclass::GradientImageFilterType	GradientImageFilterType

typedef Superclass::GradientImagePointer	GradientImagePointer

typedef Superclass::GradientImageType	GradientImageType

typedef Superclass::GradientPixelType	GradientPixelType

typedef BSplineTransformType::SpacingType	GridSpacingType

typedef Superclass::ImageSampleContainerPointer	ImageSampleContainerPointer

typedef Superclass::ImageSampleContainerType	ImageSampleContainerType

typedef Superclass::InputPointType	InputPointType

typedef Superclass::InternalMatrixType	InternalMatrixType

typedef Superclass::InterpolatorPointer	InterpolatorPointer

typedef Superclass::InterpolatorType	InterpolatorType

typedef Superclass::JacobianOfSpatialHessianType	JacobianOfSpatialHessianType

typedef Superclass::JacobianOfSpatialJacobianType	JacobianOfSpatialJacobianType

typedef Superclass::MeasureType	MeasureType

typedef Superclass::MovingImageConstPointer	MovingImageConstPointer

typedef Superclass::MovingImageMaskPointer	MovingImageMaskPointer

typedef Superclass::MovingImageMaskType	MovingImageMaskType

typedef Superclass::MovingImagePixelType	MovingImagePixelType

typedef Superclass::MovingImagePointer	MovingImagePointer

typedef Superclass::MovingImageType	MovingImageType

typedef NeighborhoodIterator < CoefficientImageType >	NeighborhoodIteratorType

typedef NeighborhoodType::SizeType	NeighborhoodSizeType

typedef Neighborhood < ScalarType, itkGetStaticConstMacro(FixedImageDimension) >	NeighborhoodType

typedef NeighborhoodOperatorImageFilter < CoefficientImageType, CoefficientImageType >	NOIFType

typedef Superclass::OutputPointType	OutputPointType

typedef Superclass::ParametersType	ParametersType

typedef SmartPointer< Self >	Pointer

typedef NeighborhoodIteratorType::RadiusType	RadiusType

typedef Superclass::RealType	RealType

typedef RigidityImageType::IndexType	RigidityImageIndexType

typedef ImageRegionIterator < RigidityImageType >	RigidityImageIteratorType

typedef RigidityImageType::Pointer	RigidityImagePointer

typedef RigidityImageType::PointType	RigidityImagePointType

typedef RigidityImageType::RegionType	RigidityImageRegionType

typedef CoefficientImageType	RigidityImageType

typedef RigidityImageType::PixelType	RigidityPixelType

typedef Superclass::ScalarType	ScalarType

typedef TransformRigidityPenaltyTerm	Self

typedef StructuringElementType::RadiusType	SERadiusType

typedef Superclass::SpatialHessianType	SpatialHessianType

typedef Superclass::SpatialJacobianType	SpatialJacobianType

typedef BinaryBallStructuringElement < RigidityPixelType, itkGetStaticConstMacro(FixedImageDimension) >	StructuringElementType

typedef TransformPenaltyTerm < TFixedImage, TScalarType >	Superclass

typedef Superclass::TransformJacobianType	TransformJacobianType

typedef Superclass::TransformParametersType	TransformParametersType

typedef Superclass::TransformPointer	TransformPointer

typedef Superclass::TransformType	TransformType

Public Types inherited from itk::TransformPenaltyTerm< TFixedImage, TScalarType >
typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::CoordinateRepresentationType	CoordinateRepresentationType

typedef Superclass::DerivativeType	DerivativeType

typedef Superclass::DerivativeValueType	DerivativeValueType

typedef Superclass::FixedImageConstPointer	FixedImageConstPointer

typedef Superclass::FixedImageMaskPointer	FixedImageMaskPointer

typedef Superclass::FixedImageMaskType	FixedImageMaskType

typedef Superclass::FixedImagePixelType	FixedImagePixelType

typedef Superclass::FixedImagePointer	FixedImagePointer

typedef Superclass::FixedImageRegionType	FixedImageRegionType

typedef Superclass::FixedImageType	FixedImageType

typedef Superclass::GradientImageFilterPointer	GradientImageFilterPointer

typedef Superclass::GradientImageFilterType	GradientImageFilterType

typedef Superclass::GradientImagePointer	GradientImagePointer

typedef Superclass::GradientImageType	GradientImageType

typedef Superclass::GradientPixelType	GradientPixelType

typedef Superclass::ImageSampleContainerPointer	ImageSampleContainerPointer

typedef Superclass::ImageSampleContainerType	ImageSampleContainerType

typedef Superclass::InputPointType	InputPointType

typedef TransformType::InternalMatrixType	InternalMatrixType

typedef Superclass::InterpolatorPointer	InterpolatorPointer

typedef Superclass::InterpolatorType	InterpolatorType

typedef TransformType::JacobianOfSpatialHessianType	JacobianOfSpatialHessianType

typedef TransformType::JacobianOfSpatialJacobianType	JacobianOfSpatialJacobianType

typedef Superclass::MeasureType	MeasureType

typedef Superclass::MovingImageConstPointer	MovingImageConstPointer

typedef Superclass::MovingImageMaskPointer	MovingImageMaskPointer

typedef Superclass::MovingImageMaskType	MovingImageMaskType

typedef Superclass::MovingImagePixelType	MovingImagePixelType

typedef Superclass::MovingImagePointer	MovingImagePointer

typedef Superclass::MovingImageType	MovingImageType

typedef Superclass::OutputPointType	OutputPointType

typedef Superclass::ParametersType	ParametersType

typedef SmartPointer< Self >	Pointer

typedef Superclass::RealType	RealType

typedef TScalarType	ScalarType

typedef TransformPenaltyTerm	Self

typedef TransformType::SpatialHessianType	SpatialHessianType

typedef TransformType::SpatialJacobianType	SpatialJacobianType

typedef AdvancedImageToImageMetric < TFixedImage, TFixedImage >	Superclass

typedef Superclass::TransformJacobianType	TransformJacobianType

typedef Superclass::TransformParametersType	TransformParametersType

typedef Superclass::AdvancedTransformType	TransformType

Public Types inherited from itk::AdvancedImageToImageMetric< TFixedImage, TFixedImage >
typedef AdvancedTransform < ScalarType, FixedImageDimension, MovingImageDimension >	AdvancedTransformType

typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::CoordinateRepresentationType	CoordinateRepresentationType

typedef Superclass::DerivativeType	DerivativeType

typedef DerivativeType::ValueType	DerivativeValueType

typedef Superclass::FixedImageConstPointer	FixedImageConstPointer

typedef FixedImageLimiterType::OutputType	FixedImageLimiterOutputType

typedef LimiterFunctionBase < RealType, FixedImageDimension >	FixedImageLimiterType

typedef Superclass::FixedImageMaskPointer	FixedImageMaskPointer

typedef Superclass::FixedImageMaskType	FixedImageMaskType

typedef FixedImageType::PixelType	FixedImagePixelType

typedef FixedImageType::Pointer	FixedImagePointer

typedef Superclass::FixedImageRegionType	FixedImageRegionType

typedef Superclass::FixedImageType	FixedImageType

typedef Superclass::GradientImageFilterPointer	GradientImageFilterPointer

typedef Superclass::GradientImageFilterType	GradientImageFilterType

typedef Superclass::GradientImagePointer	GradientImagePointer

typedef Superclass::GradientImageType	GradientImageType

typedef Superclass::GradientPixelType	GradientPixelType

typedef vnl_sparse_matrix < HessianValueType >	HessianType

typedef DerivativeType::ValueType	HessianValueType

typedef ImageSamplerType::OutputVectorContainerPointer	ImageSampleContainerPointer

typedef ImageSamplerType::OutputVectorContainerType	ImageSampleContainerType

typedef ImageSamplerType::Pointer	ImageSamplerPointer

typedef ImageSamplerBase < FixedImageType >	ImageSamplerType

typedef Superclass::InputPointType	InputPointType

typedef Superclass::InterpolatorPointer	InterpolatorPointer

typedef Superclass::InterpolatorType	InterpolatorType

typedef Superclass::MeasureType	MeasureType

typedef Superclass::MovingImageConstPointer	MovingImageConstPointer

typedef FixedArray< double, itkGetStaticConstMacro(MovingImageDimension) >	MovingImageDerivativeScalesType

typedef MovingImageLimiterType::OutputType	MovingImageLimiterOutputType

typedef LimiterFunctionBase < RealType, MovingImageDimension >	MovingImageLimiterType

typedef Superclass::MovingImageMaskPointer	MovingImageMaskPointer

typedef Superclass::MovingImageMaskType	MovingImageMaskType

typedef Superclass::MovingImagePixelType	MovingImagePixelType

typedef MovingImageType::Pointer	MovingImagePointer

typedef MovingImageType::RegionType	MovingImageRegionType

typedef Superclass::MovingImageType	MovingImageType

typedef Superclass::OutputPointType	OutputPointType

typedef Superclass::ParametersType	ParametersType

typedef SmartPointer< Self >	Pointer

typedef Superclass::RealType	RealType

typedef TransformType::ScalarType	ScalarType

typedef AdvancedImageToImageMetric	Self

typedef ImageToImageMetric < TFixedImage, TFixedImage >	Superclass

typedef Superclass::TransformJacobianType	TransformJacobianType

typedef Superclass::TransformParametersType	TransformParametersType

typedef Superclass::TransformPointer	TransformPointer

typedef Superclass::TransformType	TransformType

Public Member Functions
void	CheckUseAndCalculationBooleans (void)

void	FillRigidityCoefficientImage (const ParametersType &parameters) const

virtual const char *	GetClassName () const

virtual void	GetDerivative (const ParametersType &parameters, DerivativeType &derivative) const

virtual const MeasureType &	GetLinearityConditionGradientMagnitude ()

virtual const MeasureType &	GetLinearityConditionValue ()

virtual ScalarType	GetLinearityConditionWeight ()

virtual const MeasureType &	GetOrthonormalityConditionGradientMagnitude ()

virtual const MeasureType &	GetOrthonormalityConditionValue ()

virtual ScalarType	GetOrthonormalityConditionWeight ()

virtual const MeasureType &	GetPropernessConditionGradientMagnitude ()

virtual const MeasureType &	GetPropernessConditionValue ()

virtual ScalarType	GetPropernessConditionWeight ()

virtual MeasureType	GetValue (const ParametersType &parameters) const

virtual void	GetValueAndDerivative (const ParametersType &parameters, MeasureType &value, DerivativeType &derivative) const

virtual void	Initialize (void) throw ( ExceptionObject )

	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)

	itkStaticConstMacro (MovingImageDimension, unsigned int, FixedImageType::ImageDimension)

	itkStaticConstMacro (ImageDimension, unsigned int, FixedImageType::ImageDimension)

virtual void	SetBSplineTransform (BSplineTransformType *_arg)

virtual void	SetCalculateLinearityCondition (bool _arg)

virtual void	SetCalculateOrthonormalityCondition (bool _arg)

virtual void	SetCalculatePropernessCondition (bool _arg)

virtual void	SetDilateRigidityImages (bool _arg)

virtual void	SetDilationRadiusMultiplier (CoordinateRepresentationType _arg)

virtual void	SetFixedRigidityImage (RigidityImageType *_arg)

virtual void	SetLinearityConditionWeight (ScalarType _arg)

virtual void	SetMovingRigidityImage (RigidityImageType *_arg)

virtual void	SetOrthonormalityConditionWeight (ScalarType _arg)

virtual void	SetPropernessConditionWeight (ScalarType _arg)

virtual void	SetUseFixedRigidityImage (bool _arg)

virtual void	SetUseLinearityCondition (bool _arg)

virtual void	SetUseMovingRigidityImage (bool _arg)

virtual void	SetUseOrthonormalityCondition (bool _arg)

virtual void	SetUsePropernessCondition (bool _arg)

Public Member Functions inherited from itk::TransformPenaltyTerm< TFixedImage, TScalarType >
	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)

Public Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TFixedImage >
virtual const FixedImageLimiterType *	GetFixedImageLimiter ()

virtual double	GetFixedLimitRangeRatio () const

virtual ImageSamplerType *	GetImageSampler (void) const

virtual const MovingImageDerivativeScalesType &	GetMovingImageDerivativeScales ()

virtual const MovingImageLimiterType *	GetMovingImageLimiter ()

virtual double	GetMovingLimitRangeRatio () const

virtual double	GetRequiredRatioOfValidSamples () const

virtual void	GetSelfHessian (const TransformParametersType &parameters, HessianType &H) const

const AdvancedTransformType *	GetTransform (void) const

virtual bool	GetUseFixedImageLimiter () const

virtual bool	GetUseImageSampler () const

virtual bool	GetUseMovingImageDerivativeScales () const

virtual bool	GetUseMovingImageLimiter () const

	itkStaticConstMacro (MovingImageDimension, unsigned int, TFixedImage::ImageDimension)

	itkStaticConstMacro (FixedImageDimension, unsigned int, TFixedImage::ImageDimension)

virtual void	SetFixedImageLimiter (FixedImageLimiterType *_arg)

virtual void	SetFixedLimitRangeRatio (double _arg)

virtual void	SetImageSampler (ImageSamplerType *_arg)

virtual void	SetMovingImageDerivativeScales (MovingImageDerivativeScalesType _arg)

virtual void	SetMovingImageLimiter (MovingImageLimiterType *_arg)

virtual void	SetMovingLimitRangeRatio (double _arg)

virtual void	SetRequiredRatioOfValidSamples (double _arg)

virtual void	SetTransform (AdvancedTransformType *arg)

virtual void	SetUseMovingImageDerivativeScales (bool _arg)

Static Public Member Functions
static Pointer	New ()

Protected Member Functions
void	PrintSelf (std::ostream &os, Indent indent) const

	TransformRigidityPenaltyTerm ()

virtual	~TransformRigidityPenaltyTerm ()

Protected Member Functions inherited from itk::TransformPenaltyTerm< TFixedImage, TScalarType >
virtual bool	CheckForBSplineTransform (BSplineTransformPointer &bspline) const

	TransformPenaltyTerm ()

virtual	~TransformPenaltyTerm ()

Protected Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TFixedImage >
	AdvancedImageToImageMetric ()

virtual void	CheckForAdvancedTransform (void)

virtual void	CheckForBSplineInterpolator (void)

virtual void	CheckNumberOfSamples (unsigned long wanted, unsigned long found) const

virtual void	ComputeFixedImageExtrema (const FixedImageType *image, const FixedImageRegionType &region)

virtual void	ComputeMovingImageExtrema (const MovingImageType *image, const MovingImageRegionType &region)

virtual bool	EvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient) const

virtual bool	EvaluateTransformJacobian (const FixedImagePointType &fixedImagePoint, TransformJacobianType &jacobian, NonZeroJacobianIndicesType &nzji) const

virtual void	InitializeImageSampler (void) throw ( ExceptionObject )

virtual void	InitializeLimiters (void)

virtual bool	IsInsideMovingMask (const MovingImagePointType &point) const

void	PrintSelf (std::ostream &os, Indent indent) const

virtual void	SetUseFixedImageLimiter (bool _arg)

virtual void	SetUseImageSampler (bool _arg)

virtual void	SetUseMovingImageLimiter (bool _arg)

virtual bool	TransformPoint (const FixedImagePointType &fixedImagePoint, MovingImagePointType &mappedPoint) const

virtual	~AdvancedImageToImageMetric ()

Private Member Functions
void	Create1DOperator (NeighborhoodType &F, const std::string WhichF, const unsigned int WhichDimension, const CoefficientImageSpacingType &spacing) const

void	CreateNDOperator (NeighborhoodType &F, const std::string WhichF, const CoefficientImageSpacingType &spacing) const

virtual void	DilateRigidityImages (void)

CoefficientImagePointer	FilterSeparable (const CoefficientImageType *, const std::vector< NeighborhoodType > &Operators) const

void	operator= (const Self &)

	TransformRigidityPenaltyTerm (const Self &)

Private Attributes
BSplineTransformPointer	m_BSplineTransform

bool	m_CalculateLinearityCondition

bool	m_CalculateOrthonormalityCondition

bool	m_CalculatePropernessCondition

bool	m_DilateRigidityImages

CoordinateRepresentationType	m_DilationRadiusMultiplier

RigidityImagePointer	m_FixedRigidityImage

RigidityImagePointer	m_FixedRigidityImageDilated

std::vector< DilateFilterPointer >	m_FixedRigidityImageDilation

MeasureType	m_LinearityConditionGradientMagnitude

MeasureType	m_LinearityConditionValue

ScalarType	m_LinearityConditionWeight

RigidityImagePointer	m_MovingRigidityImage

RigidityImagePointer	m_MovingRigidityImageDilated

std::vector< DilateFilterPointer >	m_MovingRigidityImageDilation

MeasureType	m_OrthonormalityConditionGradientMagnitude

MeasureType	m_OrthonormalityConditionValue

ScalarType	m_OrthonormalityConditionWeight

MeasureType	m_PropernessConditionGradientMagnitude

MeasureType	m_PropernessConditionValue

ScalarType	m_PropernessConditionWeight

RigidityImagePointer	m_RigidityCoefficientImage

bool	m_RigidityCoefficientImageIsFilled

MeasureType	m_RigidityPenaltyTermValue

bool	m_UseFixedRigidityImage

bool	m_UseLinearityCondition

bool	m_UseMovingRigidityImage

bool	m_UseOrthonormalityCondition

bool	m_UsePropernessCondition

Additional Inherited Members
Protected Types inherited from itk::TransformPenaltyTerm< TFixedImage, TScalarType >
typedef BSplineTransformType::Pointer	BSplineTransformPointer

typedef AdvancedBSplineDeformableTransform < ScalarType, FixedImageDimension, 3 >	BSplineTransformType

typedef AdvancedCombinationTransform < ScalarType, FixedImageDimension >	CombinationTransformType

typedef Superclass::FixedImageIndexType	FixedImageIndexType

typedef Superclass::FixedImageIndexValueType	FixedImageIndexValueType

typedef Superclass::FixedImagePointType	FixedImagePointType

typedef Superclass::MovingImageContinuousIndexType	MovingImageContinuousIndexType

typedef Superclass::MovingImageIndexType	MovingImageIndexType

typedef Superclass::MovingImagePointType	MovingImagePointType

typedef Superclass::NonZeroJacobianIndicesType	NonZeroJacobianIndicesType

Protected Types inherited from itk::AdvancedImageToImageMetric< TFixedImage, TFixedImage >
typedef BSplineInterpolateImageFunction < MovingImageType, CoordinateRepresentationType, float >	BSplineInterpolatorFloatType

typedef BSplineInterpolateImageFunction < MovingImageType, CoordinateRepresentationType, double >	BSplineInterpolatorType

typedef GradientImageFilter < MovingImageType, RealType, RealType >	CentralDifferenceGradientFilterType

typedef FixedImageType::IndexType	FixedImageIndexType

typedef FixedImageIndexType::IndexValueType	FixedImageIndexValueType

typedef TransformType::InputPointType	FixedImagePointType

typedef InterpolatorType::ContinuousIndexType	MovingImageContinuousIndexType

typedef BSplineInterpolatorType::CovariantVectorType	MovingImageDerivativeType

typedef MovingImageType::IndexType	MovingImageIndexType

typedef TransformType::OutputPointType	MovingImagePointType

typedef AdvancedTransformType::NonZeroJacobianIndicesType	NonZeroJacobianIndicesType

typedef ReducedDimensionBSplineInterpolateImageFunction < MovingImageType, CoordinateRepresentationType, double >	ReducedBSplineInterpolatorType

Protected Attributes inherited from itk::AdvancedImageToImageMetric< TFixedImage, TFixedImage >
AdvancedTransformType::Pointer	m_AdvancedTransform

BSplineInterpolatorType::Pointer	m_BSplineInterpolator

BSplineInterpolatorFloatType::Pointer	m_BSplineInterpolatorFloat

CentralDifferenceGradientFilterType::Pointer	m_CentralDifferenceGradientFilter

FixedImageLimiterType::Pointer	m_FixedImageLimiter

FixedImageLimiterOutputType	m_FixedImageMaxLimit

FixedImageLimiterOutputType	m_FixedImageMinLimit

FixedImagePixelType	m_FixedImageTrueMax

FixedImagePixelType	m_FixedImageTrueMin

ImageSamplerPointer	m_ImageSampler

bool	m_InterpolatorIsBSpline

bool	m_InterpolatorIsBSplineFloat

bool	m_InterpolatorIsReducedBSpline

MovingImageLimiterType::Pointer	m_MovingImageLimiter

MovingImageLimiterOutputType	m_MovingImageMaxLimit

MovingImageLimiterOutputType	m_MovingImageMinLimit

MovingImagePixelType	m_MovingImageTrueMax

MovingImagePixelType	m_MovingImageTrueMin

ReducedBSplineInterpolatorType::Pointer	m_ReducedBSplineInterpolator

bool	m_TransformIsAdvanced

Detailed Description

template<class TFixedImage, class TScalarType>
class itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >

A cost function that calculates a rigidity penalty term.

A cost function that calculates a rigidity penalty term based on the B-spline coefficients of a B-spline transformation. This penalty term is a function of the 1st and 2nd order spatial derivatives of a transformation.

The intended use for this metric is to filter a B-spline coefficient image in order to calculate a rigidity penalty term on a B-spline transform.

The RigidityPenaltyTermValueImageFilter at each pixel location is computed by convolution with some separable 1D kernels.

The rigid penalty term penalizes deviations from a rigid transformation at regions specified by the so-called rigidity images.

This metric only works with B-splines as a transformation model.

References:
[1] M. Staring, S. Klein and J.P.W. Pluim, "A Rigidity Penalty Term for Nonrigid Registration," Medical Physics, vol. 34, no. 11, pp. 4098 - 4108, November 2007.

See Also: BSplineTransform

Definition at line 69 of file itkTransformRigidityPenaltyTerm.h.