Uses of Class org.sbml.libsbml.SBase (LibSBML Java API)

Uses of SBase in org.sbml.libsbml

Subclasses of SBase in org.sbml.libsbml
Modifier and Type	Class and Description
`class`	`AlgebraicRule` An SBML algebraic rule representing 0 = f(W).
`class`	`AssignmentRule` An SBML assignment rule representing x = f(Y).
`class`	`Association` fbc Annotation helper class for “fbc” Version 1.
`class`	`BoundingBox` layout A bounding box for an item in a diagram.
`class`	`ColorDefinition` LibSBML implementation for the ColorDefinition construct from the SBML render extension.
`class`	`Compartment` An SBML compartment, where species are located.
`class`	`CompartmentGlyph` layout A glyph for an SBML compartment.
`class`	`CompartmentType` A compartment type in SBML Level 2.
`class`	`CompBase` comp Convenience class for `SBase`-derived classes.
`class`	`Constraint` An SBML constraint, for stating validity assumptions.
`class`	`CubicBezier` layout A Cubic Bézier smooth curve.
`class`	`Curve` layout A curve connecting elements in a diagram.
`class`	`DefaultTerm` qual The default result of a `Transition`.
`class`	`DefaultValues` TODO:Definition of the `DefaultValues` class.
`class`	`Delay` A delay on the time of execution of an SBML event.
`class`	`Deletion` comp Deletion of an object from a submodel.
`class`	`Dimensions` layout Spatial dimensions of a 2D or 3D shape.
`class`	`Ellipse` graphical representation of an ellipse from the SBML render extension
`class`	`Event` A discontinuous SBML event.
`class`	`EventAssignment` An assignment to a variable by an SBML event.
`class`	`ExternalModelDefinition` comp A reference to an externally-defined model.
`class`	`FbcAnd` fbc An “and” relationship for gene products
`class`	`FbcAssociation` fbc Base class for `FbcAnd`, `FbcOr`, and `GeneProductRef`
`class`	`FbcOr` fbc An “or” relationship for gene products
`class`	`FluxBound` fbc Max or min value for a reaction flux.
`class`	`FluxObjective` fbc An objective function for a flux.
`class`	`FunctionDefinition` A user-defined function in an SBML model.
`class`	`FunctionTerm` qual A function term.
`class`	`GeneAssociation` fbc Annotation helper class for “fbc” Version 1.
`class`	`GeneProduct` fbc `Association` of a gene product with a `Reaction`
`class`	`GeneProductAssociation` fbc `Association` between gene products and reactions
`class`	`GeneProductRef` fbc Reference to a gene product of a reaction
`class`	`GeneralGlyph` layout A glyph for miscellaneous items.
`class`	`GlobalRenderInformation` `GlobalRenderInformation` is the render information stored in the `ListOfLayouts`.
`class`	`GlobalStyle` implementation of the `GlobalStyle` concept of the SBML render extension.
`class`	`GradientBase` abstract base class for linear and radial gradients
`class`	`GradientStop` LibSBML implementation of the gradient stop concept from the
`class`	`GraphicalObject` layout Base class of objects that store layouts.
`class`	`GraphicalPrimitive1D` base class for all graphical primitives which implements all 1D attributes
`class`	`GraphicalPrimitive2D` base class for all graphical primitives which implements all 2D attributes
`class`	`Group` groups Representation of a group of SBML components.
`class`	`Image` implementation of the `Image` concept from the SBML render extension
`class`	`InitialAssignment` An SBML initial assignment, evaluated once only.
`class`	`Input` qual The input to a `QualitativeSpecies`.
`class`	`KineticLaw` The rate expression for an SBML reaction.
`class`	`Layout` layout The layout of a diagram of an SBML model.
`class`	`LinearGradient` Representation of a linear gradient object from the SBML render extension.
`class`	`LineEnding` a `LineEnding` is a decoration element for the start and/or end of curves in the SBML render extension, e.g.
`class`	`LineSegment` layout Representation of a line.
`class`	`ListOf` Parent class for libSBML's 'ListOfXYZ' classes.
`class`	`ListOfColorDefinitions` LibSBML implementation for a container which holds zero or more `ColorDefinition` objects.
`class`	`ListOfCompartmentGlyphs` layout A list of `CompartmentGlyph` objects.
`class`	`ListOfCompartments` A list of `Compartment` objects.
`class`	`ListOfCompartmentTypes` A list of `CompartmentType` objects.
`class`	`ListOfConstraints` A list of `Constraint` objects.
`class`	`ListOfCurveElements` A container to store curve elements (RenderPoint and `RenderCubicBezier`).
`class`	`ListOfDeletions` comp A list of `Deletion` objects.
`class`	`ListOfDrawables` container class that stores objects derived from `Transformation2D`.
`class`	`ListOfEventAssignments` A list of `EventAssignment` objects.
`class`	`ListOfEvents` A list of `Event` objects.
`class`	`ListOfExternalModelDefinitions` comp A list of `ExternalModelDefinition` objects.
`class`	`ListOfFbcAssociations` fbc A list of `FbcAssociation` objects.
`class`	`ListOfFluxBounds` fbc A list of `FluxBound` objects.
`class`	`ListOfFluxObjectives` fbc A list of `FluxObjective` objects.
`class`	`ListOfFunctionDefinitions` A list of `FunctionDefinition` objects.
`class`	`ListOfFunctionTerms` qual A list of `FunctionTerm` objects.
`class`	`ListOfGeneAssociations` fbc A list of `GeneAssociation` objects.
`class`	`ListOfGeneProducts` fbc A list of `GeneProduct` objects.
`class`	`ListOfGlobalRenderInformation` container class that stores `GlobalRenderInformation` objects.
`class`	`ListOfGlobalStyles` `ListOfGlobalStyles` is the container class that stores GlobalStyles in `GlobalRenderInformation` objects.
`class`	`ListOfGradientDefinitions` a container class that holds a list of gradient definitions.
`class`	`ListOfGradientStops` a container that holds zero or more `GradientStop` objects.
`class`	`ListOfGraphicalObjects` layout A list of `GraphicalObject` objects.
`class`	`ListOfGroups` groups A list of `Group` objects.
`class`	`ListOfInitialAssignments` A list of `InitialAssignment` objects.
`class`	`ListOfInputs` qual A list of `Input` objects.
`class`	`ListOfLayouts` layout A list of `Layout` objects.
`class`	`ListOfLineEndings` container class to store `LineEnding` objects
`class`	`ListOfLineSegments` layout A list of `LineSegment` objects.
`class`	`ListOfLocalParameters` A list of `LocalParameter` objects.
`class`	`ListOfLocalRenderInformation` container class that stores `LocalRenderInformation` objects.
`class`	`ListOfLocalStyles` `ListOfLocalStyles` is the container class that stores LocalStyles in `LocalRenderInformation` objects.
`class`	`ListOfMembers` groups A list of `Member` objects.
`class`	`ListOfModelDefinitions` comp A list of `ModelDefinition` objects.
`class`	`ListOfObjectives` fbc A list of `Objective` objects.
`class`	`ListOfOutputs` qual A list of `Output` objects.
`class`	`ListOfParameters` A list of `Parameter` objects.
`class`	`ListOfPorts` comp A list of `Port` objects.
`class`	`ListOfQualitativeSpecies` qual A list of `QualitativeSpecies` objects.
`class`	`ListOfReactionGlyphs` layout A list of `ReactionGlyph` objects.
`class`	`ListOfReactions` A list of `Reaction` objects.
`class`	`ListOfReferenceGlyphs` layout A list of `ReferenceGlyph` objects.
`class`	`ListOfReplacedElements` comp A list of `ReplacedElement` objects.
`class`	`ListOfRules` A list of `Rule` objects.
`class`	`ListOfSpecies` A list of `Species` objects.
`class`	`ListOfSpeciesGlyphs` layout A list of `SpeciesGlyph` objects.
`class`	`ListOfSpeciesReferenceGlyphs` layout A list of `SpeciesReferenceGlyph` objects.
`class`	`ListOfSpeciesReferences` A list of `SpeciesReference` objects.
`class`	`ListOfSpeciesTypes` A list of `SpeciesType` objects.
`class`	`ListOfSubmodels` comp A list of `Submodel` objects.
`class`	`ListOfTextGlyphs` layout A list of `TextGlyph` objects.
`class`	`ListOfTransitions` qual A list of `Transition` objects.
`class`	`ListOfUnitDefinitions` A list of `UnitDefinition` objects.
`class`	`ListOfUnits` A list of `Unit` objects.
`class`	`LocalParameter` A parameter inside an SBML reaction definition.
`class`	`LocalRenderInformation` `LocalRenderInformation` is the render information stored in Layouts.
`class`	`LocalStyle` implementation of the `LocalStyle` concept of the SBML render extension.
`class`	`Member` groups TODO:Definition of the `Member` class.
`class`	`Model` An SBML model.
`class`	`ModelDefinition` comp A model used in model composition.
`class`	`ModifierSpeciesReference` A reference to an SBML modifier species.
`class`	`Objective` fbc An objective function.
`class`	`Output` qual The output from a `QualitativeSpecies`.
`class`	`Parameter` An SBML parameter: a named symbol with a value.
`class`	`Point` layout Representation of a point.
`class`	`Polygon` class representing a polygon from the SBML render extension
`class`	`Port` comp An interface to be used in composition.
`class`	`Priority` The priority of execution of an SBML event.
`class`	`QualitativeSpecies` qual Extension of `Species`.
`class`	`RadialGradient` Representation of a radial gradient object from the SBML render extension.
`class`	`RateRule` An SBML rate rule representing dx/dt = f(Y).
`class`	`Reaction` An SBML reaction between species in an SBML model.
`class`	`ReactionGlyph` layout A glyph for an SBML reaction.
`class`	`Rectangle`
`class`	`ReferenceGlyph` layout Connection between an object and a glyph.
`class`	`RenderCubicBezier` `CubicBezier` representation for `RenderCurve` objects and `Polygon` objects.
`class`	`RenderCurve` implementation of the `Curve` concept from the SBML render extension
`class`	`RenderGroup` The `RenderGroup` concept from the SBML render extension is used to group graphical primitives together to create composite representations from simple primitives.
`class`	`RenderInformationBase` abstract base class for local and global render information.
`class`	`RenderPoint` Represents a point where the coordinates can be made up of absolute as well as relative values ( Render objects are often specified relative to the current viewport, i.e.
`class`	`ReplacedBy` comp Indicates an object replaced by another.
`class`	`ReplacedElement` comp Indicates an object replaces another.
`class`	`Replacing` comp Convenience class.
`class`	`Rule` Parent class for SBML rules in libSBML.
`class`	`SBaseRef` comp Base class for references to objects.
`class`	`SBMLDocument` Overall SBML container object.
`class`	`SimpleSpeciesReference` Abstract class for references to species in reactions.
`class`	`Species` An SBML species – a pool of entities.
`class`	`SpeciesGlyph` layout A glyph for an SBML species.
`class`	`SpeciesReference` A reference to an SBML species in a reaction.
`class`	`SpeciesReferenceGlyph` layout A glyph for an SBML species reference.
`class`	`SpeciesType` A species type in SBML Level 2.
`class`	`StoichiometryMath` Stochiometry expressions in SBML Level 2 reactions.
`class`	`Style` abstract base class for local and global styles
`class`	`Submodel` comp A model instance inside another model.
`class`	`Text` `Text` element from the SBML render extension.
`class`	`TextGlyph` layout A glyph for a text label.
`class`	`Transformation` implementation of a 3D transformation matrix.
`class`	`Transformation2D` implementation of a 2D transformation matrix.
`class`	`Transition` qual A transition of a `QualitativeSpecies`.
`class`	`Trigger` The trigger expression for an SBML event.
`class`	`Unit` A single unit referenced in an SBML unit definition.
`class`	`UnitDefinition` A definition of a unit used in an SBML model.

Methods in org.sbml.libsbml that return SBase
Modifier and Type	Method and Description
`SBase`	Submodel.`cloneObject()` Creates and returns a deep copy of this `Submodel` object.
`SBase`	SBaseRef.`cloneObject()` Creates and returns a deep copy of this `SBaseRef` object.
`SBase`	DefaultValues.`cloneObject()` Creates and returns a deep copy of this `DefaultValues` object.
`SBase`	ModifierSpeciesReference.`cloneObject()` Creates and returns a deep copy of this `ModifierSpeciesReference` object.
`SBase`	Style.`cloneObject()` Creates and returns a deep copy of this `Style` object.
`SBase`	RenderGroup.`cloneObject()` Creates and returns a deep copy of this `RenderGroup` object.
`SBase`	GradientBase.`cloneObject()` Creates and returns a deep copy of this `SBase` object.
`SBase`	ReplacedBy.`cloneObject()` Creates and returns a deep copy of this `ReplacedBy` object.
`SBase`	Deletion.`cloneObject()` Creates and returns a deep copy of this `Deletion` object.
`SBase`	ReplacedElement.`cloneObject()` Creates and returns a deep copy of this `ReplacedElement` object.
`SBase`	Port.`cloneObject()` Creates and returns a deep copy of this `Port` object.
`SBase`	GradientStop.`cloneObject()` Creates and returns a deep copy of this `GradientStop` object.
`SBase`	SBase.`cloneObject()` Creates and returns a deep copy of this `SBase` object.
`SBase`	ExternalModelDefinition.`cloneObject()` Creates and returns a deep copy of this `ExternalModelDefinition` object.
`SBase`	Transition.`createObject(XMLInputStream stream)` Create and return an SBML object of this class, if present.
`SBase`	RenderExtension.`DowncastSBase(long cPtr, boolean owner)`
`SBase`	GroupsExtension.`DowncastSBase(long cPtr, boolean owner)`
`SBase`	ListOfReplacedElements.`get(long n)` Get a `ReplacedElement` from the `ListOfReplacedElements`.
`SBase`	ListOfQualitativeSpecies.`get(long n)` Get a `QualitativeSpecies` from the `ListOfQualitativeSpecies`.
`SBase`	ListOfModelDefinitions.`get(long n)` Get a `ModelDefinition` from the `ListOfModelDefinitions`.
`SBase`	ListOfGlobalRenderInformation.`get(long i)` Returns a pointer to the `GlobalRenderInformation` with the given index or null if the index is invalid.
`SBase`	ListOfSubmodels.`get(long n)` Get a `Submodel` from the `ListOfSubmodels`.
`SBase`	ListOfLocalRenderInformation.`get(long i)` Returns a pointer to the `LocalRenderInformation` with the given index or null if the index is invalid.
`SBase`	ListOfDeletions.`get(long n)` Get a `Deletion` from the `ListOfDeletions`.
`SBase`	ListOfCurveElements.`get(long i)` Returns a pointer to the `RenderPoint` with the given index or null if the index is invalid.
`SBase`	ListOfExternalModelDefinitions.`get(long n)` Get a `ExternalModelDefinition` from the `ListOfExternalModelDefinitions`.
`SBase`	ListOfGradientDefinitions.`get(long i)` Returns a pointer to the `GradientBase` with the given index or null if the index is invalid.
`SBase`	ListOfGradientStops.`get(long i)` Returns a pointer to the `GradientStop` with the given index or null if the index is invalid.
`SBase`	SBaseList.`get(long n)`
`SBase`	ListOfDrawables.`get(long i)` Returns a pointer to the `Transformation2D` with the given index or null if the index is invalid.
`SBase`	ListOf.`get(long n)` Get an item from the list.
`SBase`	ListOfPorts.`get(long n)` Get a `Port` from the `ListOfPorts`.
`SBase`	SBase.`getAncestorOfType(int type)` Returns the first ancestor object that has the given SBML type code from the given package.
`SBase`	SBase.`getAncestorOfType(int type, java.lang.String pkgName)` Returns the first ancestor object that has the given SBML type code from the given package.
`SBase`	Submodel.`getElementByMetaId(java.lang.String metaid)` Returns the first child element it can find with the given `metaid`, or itself if it has the given `metaid`, or `null` if no such object is found.
`SBase`	SBasePlugin.`getElementByMetaId(java.lang.String metaid)` Return the first child object found with a given meta identifier.
`SBase`	SBaseRef.`getElementByMetaId(java.lang.String metaid)` Returns the first child element it can find with the given `metaid`, or itself if it has the given `metaid`, or `null` if no such object is found.
`SBase`	Group.`getElementByMetaId(java.lang.String metaid)` Returns the first child element that has the given `metaid`, or `null` if no such object is found.
`SBase`	GroupsModelPlugin.`getElementByMetaId(java.lang.String metaid)` Returns the first child element that has the given `metaid`, or `null` if no such object is found.
`SBase`	CompSBasePlugin.`getElementByMetaId(java.lang.String metaid)` Returns the first child element it can find with the given `metaid`, or itself if it has the given `metaid`, or `null` if no such object is found.
`SBase`	UnitDefinition.`getElementByMetaId(java.lang.String metaid)` Returns the first child element it can find with the given `metaid`, or `null` if no such object is found.
`SBase`	Transition.`getElementByMetaId(java.lang.String metaid)` Returns the first child element it can find with the given `metaid`, or itself if it has the given `metaid`, or `null` if no such object is found.
`SBase`	QualModelPlugin.`getElementByMetaId(java.lang.String metaid)` Returns the first child element that has the given `metaid`, or `null` if no such object is found.
`SBase`	KineticLaw.`getElementByMetaId(java.lang.String metaid)` Returns the first child element it can find with the given `metaid`, or `null` if no such object is found.
`SBase`	CompModelPlugin.`getElementByMetaId(java.lang.String metaid)` Returns the first child element it can find with the given meta identifier, or itself if it has the given `metaid`, or `null` if no such object is found.
`SBase`	Reaction.`getElementByMetaId(java.lang.String metaid)` Returns the first child element it can find with the given `metaid`, or `null` if no such object is found.
`SBase`	Model.`getElementByMetaId(java.lang.String metaid)` Returns the first child element it can find with the given `metaid`.
`SBase`	SBMLDocument.`getElementByMetaId(java.lang.String metaid)` Returns the first child element it can find with the given `metaid`, or itself if it has the given `metaid`, or `null` if no such object is found.
`SBase`	SBase.`getElementByMetaId(java.lang.String metaid)` Returns the first child element it can find with a specific 'metaid' attribute value, or `null` if no such object is found.
`SBase`	CompSBMLDocumentPlugin.`getElementByMetaId(java.lang.String metaid)` Returns the first child element it can find with the given `metaid`, or itself if it has the given `metaid`, or `null` if no such object is found.
`SBase`	ListOf.`getElementByMetaId(java.lang.String metaid)` Returns the first child element found with the given meta-identifier.
`SBase`	Event.`getElementByMetaId(java.lang.String metaid)` Returns the first child element it can find with the given `metaid`, or `null` if no such object is found.
`SBase`	Submodel.`getElementBySId(java.lang.String id)` Returns the first child element found that has the given `id` in the model-wide SId namespace, or `null` if no such object is found.
`SBase`	SBasePlugin.`getElementBySId(java.lang.String id)` Return the first child object found with a given identifier.
`SBase`	SBaseRef.`getElementBySId(java.lang.String id)` Returns the first child element found that has the given `id` in the model-wide SId namespace, or `null` if no such object is found.
`SBase`	Group.`getElementBySId(java.lang.String id)` Returns the first child element that has the given `id` in the model-wide SId namespace, or `null` if no such object is found.
`SBase`	GroupsModelPlugin.`getElementBySId(java.lang.String id)` Returns the first child element that has the given `id` in the model-wide SId namespace, or `null` if no such object is found.
`SBase`	CompSBasePlugin.`getElementBySId(java.lang.String id)` Returns the first child element found that has the given `id` in the model-wide SId namespace, or `null` if no such object is found.
`SBase`	UnitDefinition.`getElementBySId(java.lang.String id)` Returns the first child element found that has the given `id` in the model-wide SId namespace, or `null` if no such object is found.
`SBase`	Transition.`getElementBySId(java.lang.String id)` Returns the first child element found that has the given `id` in the model-wide SId namespace, or `null` if no such object is found.
`SBase`	QualModelPlugin.`getElementBySId(java.lang.String id)` Returns the first child element that has the given `id` in the model-wide SId namespace, or `null` if no such object is found.
`SBase`	KineticLaw.`getElementBySId(java.lang.String id)` Returns the first child element found that has the given `id` in the model-wide SId namespace, or `null` if no such object is found.
`SBase`	ListOfLocalParameters.`getElementBySId(java.lang.String id)` Returns the first child element found that has the given `id` in the model-wide SId namespace, or `null` if no such object is found.
`SBase`	ListOfEventAssignments.`getElementBySId(java.lang.String id)` Returns the first child element found that has the given `id` in the model-wide SId namespace, or `null` if no such object is found.
`SBase`	CompModelPlugin.`getElementBySId(java.lang.String id)` Returns the first child element found that has the given `id` in the model-wide SId namespace, or `null` if no such object is found.
`SBase`	Reaction.`getElementBySId(java.lang.String id)` Returns the first child element found that has the given `id` in the model-wide SId namespace, or `null` if no such object is found.
`SBase`	Model.`getElementBySId(java.lang.String id)` Returns the first child element found that has the given `id`.
`SBase`	SBMLDocument.`getElementBySId(java.lang.String id)` Returns the first child element found that has the given `id` in the model-wide SId namespace, or `null` if no such object is found.
`SBase`	SBase.`getElementBySId(java.lang.String id)` Returns the first child element found that has the given `id` in the model-wide `SId` namespace, or `null` if no such object is found.
`SBase`	CompSBMLDocumentPlugin.`getElementBySId(java.lang.String id)` Returns the first child element found that has the given `id` in the model-wide SId namespace, or `null` if no such object is found.
`SBase`	ListOf.`getElementBySId(java.lang.String id)` Returns the first child element found that has the given identifier.
`SBase`	ListOfInitialAssignments.`getElementBySId(java.lang.String id)` Returns the first child element found that has the given `id` in the model-wide SId namespace, or `null` if no such object is found.
`SBase`	ListOfUnitDefinitions.`getElementBySId(java.lang.String id)` Returns the first child element found that has the given `id` in the model-wide SId namespace, or `null` if no such object is found.
`SBase`	Event.`getElementBySId(java.lang.String id)` Returns the first child element found that has the given `id` in the model-wide SId namespace, or `null` if no such object is found.
`SBase`	ListOfPorts.`getElementBySId(java.lang.String id)` Returns the first child element found that has the given `id` in the model-wide SId namespace, or `null` if no such object is found.
`SBase`	ListOfRules.`getElementBySId(java.lang.String id)` Returns the first child element found that has the given `id` in the model-wide SId namespace, or `null` if no such object is found.
`SBase`	CompSBMLDocumentPlugin.`getModel(java.lang.String sid)` Searches the model namespace of the document and returns the `Model`, `ModelDefinition`, or ExternalModelDefintion object with the given identifier.
`SBase`	SBasePlugin.`getParentSBMLObject()` Returns the parent object to which this plugin object is connected.
`SBase`	SBase.`getParentSBMLObject()` Returns the parent SBML object containing this object.
`SBase`	ASTNode.`getParentSBMLObject()` Returns the parent SBML object.
`SBase`	SBaseRef.`getReferencedElement()` Returns the object pointed to by this element.
`SBase`	SBaseRef.`getReferencedElementFrom(Model model)` Examines the referenced `Model` for the referenced object, and returns it, if found.
`SBase`	ReplacedElement.`getReferencedElementFrom(Model model)` Finds the `SBase` object this `ReplacedElement` object points to, if any.
`SBase`	ListOfReplacedElements.`remove(long n)` Removes the nth item from this `ListOfReplacedElements` items and returns a pointer to it.
`SBase`	ListOfQualitativeSpecies.`remove(long n)` Removes the nth `QualitativeSpecies` from this `ListOfQualitativeSpecies` and returns a pointer to it.
`SBase`	ListOfModelDefinitions.`remove(long n)` Removes the nth item from this `ListOfModelDefinitions` items and returns a pointer to it.
`SBase`	ListOfGlobalRenderInformation.`remove(long n)` Removes the nth item from this `ListOfGlobalRenderInformation` items and returns a pointer to it.
`SBase`	ListOfSubmodels.`remove(long n)` Removes the nth item from this `ListOfSubmodels` items and returns a pointer to it.
`SBase`	ListOfLocalRenderInformation.`remove(long n)` Removes the nth item from this `ListOfLocalRenderInformation` items and returns a pointer to it.
`SBase`	ListOfDeletions.`remove(long n)` Removes the nth item from this `ListOfDeletions` items and returns a pointer to it.
`SBase`	ListOfCurveElements.`remove(long i)` Removes the `RenderPoint` with the given index and returns a pointer to the removed object.
`SBase`	ListOfExternalModelDefinitions.`remove(long n)` Removes the nth item from this `ListOfExternalModelDefinitions` items and returns a pointer to it.
`SBase`	ListOfGradientDefinitions.`remove(long n)` Removes the nth item from this `ListOfGradientDefinitions` items and returns a pointer to it.
`SBase`	ListOfGradientStops.`remove(long n)` Removes the nth item from this `ListOfGradientStops` items and returns a pointer to it.
`SBase`	SBaseList.`remove(long n)`
`SBase`	ListOfDrawables.`remove(long n)` Removes the nth item from this `ListOfDrawables` items and returns a pointer to it.
`SBase`	ListOf.`remove(long n)` Removes the nth item from this `ListOf` list of items and returns it.
`SBase`	ListOfPorts.`remove(long n)` Removes the nth item from this `ListOfPorts` items and returns a pointer to it.

Methods in org.sbml.libsbml with parameters of type SBase
Modifier and Type	Method and Description
`void`	SBaseList.`add(SBase item)`
`int`	ListOf.`append(SBase item)` Adds an item to the end of this `ListOf`'s list of items.
`int`	ListOf.`appendAndOwn(SBase disownedItem)` Adds an item to the end of this `ListOf`'s list of items.
`static XMLNode`	RDFAnnotationParser.`createCVTerms(SBase obj)` Takes a list of `CVTerm` objects and creates a the RDF 'Description' element.
`boolean`	ElementFilter.`filter(SBase element)` Predicate to test elements.
`static Model`	CompBase.`getParentModel(SBase child)` Returns the `Model` object to which the referenced child object belongs.
`int`	ListOf.`insert(int location, SBase item)` Inserts an item at a given position in this `ListOf`'s list of items.
`int`	ListOf.`insertAndOwn(int location, SBase disownedItem)` Inserts an item at a given position in this `ListOf`'s list of items.
`boolean`	SBasePlugin.`isValidTypeForList(SBase item)`
`boolean`	ListOfGlobalRenderInformation.`isValidTypeForList(SBase item)`
`boolean`	ListOfLocalRenderInformation.`isValidTypeForList(SBase item)`
`boolean`	ListOfCurveElements.`isValidTypeForList(SBase item)`
`boolean`	ListOfGradientDefinitions.`isValidTypeForList(SBase item)`
`boolean`	ListOfDrawables.`isValidTypeForList(SBase item)`
`boolean`	SBase.`matchesRequiredSBMLNamespacesForAddition(SBase sb)` Returns `true` if this object's set of XML namespaces are a subset of the given object's XML namespaces.
`boolean`	SBase.`matchesSBMLNamespaces(SBase sb)` Returns `true` if this object's set of XML namespaces are the same as the given object's XML namespaces.
`static XMLNode`	RDFAnnotationParser.`parseCVTerms(SBase obj)` Takes a list of `CVTerm` objects and creates a complete SBML annotation around it.
`static XMLNode`	RDFAnnotationParser.`parseModelHistory(SBase obj)` Reads the model history and cvTerms stored in `obj` and creates the XML structure for an SBML annotation representing that metadata if there is a model history stored in `obj`.
`static XMLNode`	RDFAnnotationParser.`parseOnlyModelHistory(SBase obj)` Reads the model history stored in `obj` and creates the XML structure for an SBML annotation representing that history.
`void`	SBaseList.`prepend(SBase item)`
`int`	Submodel.`replaceElement(SBase toReplace, SBase replacement)` Delete the element in question from the stored instantiated `Model`, and replace all references to it with references to the replacement object.

Uses of Classorg.sbml.libsbml.SBase

Uses of SBase in org.sbml.libsbml

Uses of Class
org.sbml.libsbml.SBase