.. note::
    :class: sphx-glr-download-link-note

    Click :ref:`here <sphx_glr_download_auto_examples_edges_plot_active_contours.py>` to download the full example code
.. rst-class:: sphx-glr-example-title

.. _sphx_glr_auto_examples_edges_plot_active_contours.py:


====================
Active Contour Model
====================

The active contour model is a method to fit open or closed splines to lines or
edges in an image [1]_. It works by minimising an energy that is in part
defined by the image and part by the spline's shape: length and smoothness. The
minimization is done implicitly in the shape energy and explicitly in the
image energy.

In the following two examples the active contour model is used (1) to segment
the face of a person from the rest of an image by fitting a closed curve
to the edges of the face and (2) to find the darkest curve between two fixed
points while obeying smoothness considerations. Typically it is a good idea to
smooth images a bit before analyzing, as done in the following examples.

We initialize a circle around the astronaut's face and use the default boundary
condition ``bc='periodic'`` to fit a closed curve. The default parameters
``w_line=0, w_edge=1`` will make the curve search towards edges, such as the
boundaries of the face.

.. [1] *Snakes: Active contour models*. Kass, M.; Witkin, A.; Terzopoulos, D.
       International Journal of Computer Vision 1 (4): 321 (1988).
       DOI:`10.1007/BF00133570`



.. code-block:: python

    ====================
    Active Contour Model
    ====================

    The active contour model is a method to fit open or closed splines to lines or
    edges in an image [1]_. It works by minimising an energy that is in part
    defined by the image and part by the spline's shape: length and smoothness. The
    minimization is done implicitly in the shape energy and explicitly in the
    image energy.

    In the following two examples the active contour model is used (1) to segment
    the face of a person from the rest of an image by fitting a closed curve
    to the edges of the face and (2) to find the darkest curve between two fixed
    points while obeying smoothness considerations. Typically it is a good idea to
    smooth images a bit before analyzing, as done in the following examples.

    We initialize a circle around the astronaut's face and use the default boundary
    condition ``bc='periodic'`` to fit a closed curve. The default parameters
    ``w_line=0, w_edge=1`` will make the curve search towards edges, such as the
    boundaries of the face.

    .. [1] *Snakes: Active contour models*. Kass, M.; Witkin, A.; Terzopoulos, D.
           International Journal of Computer Vision 1 (4): 321 (1988).
           DOI:`10.1007/BF00133570`
    """

    import numpy as np
    import matplotlib.pyplot as plt
    from skimage.color import rgb2gray
    from skimage import data
    from skimage.filters import gaussian
    from skimage.segmentation import active_contour


    img = data.astronaut()
    img = rgb2gray(img)

    s = np.linspace(0, 2*np.pi, 400)
    r = 100 + 100*np.sin(s)
    c = 220 + 100*np.cos(s)
    init = np.array([r, c]).T

    snake = active_contour(gaussian(img, 3),
                           init, alpha=0.015, beta=10, gamma=0.001,
                           coordinates='rc')

    fig, ax = plt.subplots(figsize=(7, 7))
    ax.imshow(img, cmap=plt.cm.gray)
    ax.plot(init[:, 1], init[:, 0], '--r', lw=3)
    ax.plot(snake[:, 1], snake[:, 0], '-b', lw=3)
    ax.set_xticks([]), ax.set_yticks([])
    ax.axis([0, img.shape[1], img.shape[0], 0])

    plt.show()




.. code-block:: pytb

    Traceback (most recent call last):
      File "/build/skimage-Lp2Zl4/skimage-0.16.2/doc/examples/edges/plot_active_contours.py", line 1
        ====================
        ^
    SyntaxError: invalid syntax




Here we initialize a straight line between two points, `(5, 136)` and
`(424, 50)`, and require that the spline has its end points there by giving
the boundary condition `bc='fixed'`. We furthermore make the algorithm
search for dark lines by giving a negative `w_line` value.



.. code-block:: python


    img = data.text()

    r = np.linspace(136, 50, 100)
    c = np.linspace(5, 424, 100)
    init = np.array([r, c]).T

    snake = active_contour(gaussian(img, 1), init, boundary_condition='fixed',
                           alpha=0.1, beta=1.0, w_line=-5, w_edge=0, gamma=0.1,
                           coordinates='rc')

    fig, ax = plt.subplots(figsize=(9, 5))
    ax.imshow(img, cmap=plt.cm.gray)
    ax.plot(init[:, 1], init[:, 0], '--r', lw=3)
    ax.plot(snake[:, 1], snake[:, 0], '-b', lw=3)
    ax.set_xticks([]), ax.set_yticks([])
    ax.axis([0, img.shape[1], img.shape[0], 0])

    plt.show()

**Total running time of the script:** ( 0 minutes  0.000 seconds)


.. _sphx_glr_download_auto_examples_edges_plot_active_contours.py:


.. only :: html

 .. container:: sphx-glr-footer
    :class: sphx-glr-footer-example



  .. container:: sphx-glr-download

     :download:`Download Python source code: plot_active_contours.py <plot_active_contours.py>`



  .. container:: sphx-glr-download

     :download:`Download Jupyter notebook: plot_active_contours.ipynb <plot_active_contours.ipynb>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.readthedocs.io>`_
