SRAAccession (htsjdk 2.24.1 API)

java.lang.Object
- htsjdk.samtools.sra.SRAAccession

All Implemented Interfaces:

Serializable
```
public class SRAAccession
extends Object
implements Serializable
```
Describes a single SRA accession for SRA read collection Also provides app string functionality and allows to check if working SRA is supported on the running platform Important: due to checks performed in SRAAccession.isValid(), we won't recognise any accessions other than ones that follow the pattern "^[SED]RR[0-9]{6,9}$", e.g. SRR000123

See Also:

Serialized Form

Constructor Summary

Constructors
Constructor Description

SRAAccession(String acc)

Method Summary

All Methods Static Methods Instance Methods Concrete Methods Deprecated Methods
Modifier and Type	Method	Description
`static ExceptionInInitializerError`	`checkIfInitialized()`	Tries to initialize SRA.
`static boolean`	`isSupported()`	Deprecated. use `checkIfInitialized()` instead
`boolean`	`isValid()`
`static boolean`	`isValid(String acc)`
`static void`	`setAppVersionString(String appVersionString)`	Sets an app version string which will let SRA know which software uses it.
`String`	`toString()`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Constructor Detail
  - SRAAccession
```
public SRAAccession(String acc)
```
    Parameters:
    
    acc - accession
- Method Detail
  - setAppVersionString
```
public static void setAppVersionString(String appVersionString)
```
    Sets an app version string which will let SRA know which software uses it.
    
    Parameters:
    
    appVersionString - a string that describes running application
  - isSupported
```
@Deprecated
public static boolean isSupported()
```
    Deprecated.
    use checkIfInitialized() instead
    
    Returns:
    
    true if SRA successfully loaded native libraries and fully initialized, false otherwise
  - checkIfInitialized
```
public static ExceptionInInitializerError checkIfInitialized()
```
    Tries to initialize SRA. Initialization error is saved during first call, all subsequent calls will return the same saved error or null.
    
    Returns:
    
    ExceptionInInitializerError if initialization failed, null if initialization was successful
  - isValid
```
public static boolean isValid(String acc)
```
    Parameters:
    
    acc - accession
    
    Returns:
    
    true if a string is a valid SRA accession
  - toString
```
public String toString()
```
    Overrides:
    
    toString in class Object
  - isValid
```
public boolean isValid()
```
    Returns:
    
    true if contained string is an SRA accession