ChrIndex (htsjdk 2.24.1 API)

All Known Implementing Classes:

IntervalTreeIndex.ChrIndex, LinearIndex.ChrIndex
```
public interface ChrIndex
```
Represents an index on a specific chromosome

Method Summary

All Methods Instance Methods Abstract Methods
Modifier and Type	Method	Description
`List<Block>`	`getBlocks()`
`List<Block>`	`getBlocks(int start, int end)`
`String`	`getName()`
`void`	`read(LittleEndianInputStream dis)`
`void`	`write(LittleEndianOutputStream dos)`

- Method Detail
  - getName
```
String getName()
```
  - getBlocks
```
List<Block> getBlocks()
```
    Returns:
    
    all blocks in ChrIndex
  - getBlocks
```
List<Block> getBlocks(int start,
                      int end)
```
    Parameters:
    
    start - the start position, one based
    
    end - the end position, one based
    
    Returns:
    
    a list of blocks that include the region defined from start to stop. Can never return null
  - write
```
void write(LittleEndianOutputStream dos)
    throws IOException
```
    Throws:
    
    IOException
  - read
```
void read(LittleEndianInputStream dis)
   throws IOException
```
    Throws:
    
    IOException