java.lang.Object
- htsjdk.variant.variantcontext.writer.BCF2FieldWriter
- - htsjdk.variant.variantcontext.writer.BCF2FieldWriter.GenotypesWriter
  - - htsjdk.variant.variantcontext.writer.BCF2FieldWriter.IGFGenotypesWriter

Enclosing class:: BCF2FieldWriter

public static class BCF2FieldWriter.IGFGenotypesWriter
extends BCF2FieldWriter.GenotypesWriter

Nested Class Summary
- Nested classes/interfaces inherited from class htsjdk.variant.variantcontext.writer.BCF2FieldWriter
  BCF2FieldWriter.FTGenotypesWriter, BCF2FieldWriter.GenericSiteWriter, BCF2FieldWriter.GenotypesWriter, BCF2FieldWriter.GTWriter, BCF2FieldWriter.IGFGenotypesWriter, BCF2FieldWriter.IntegerTypeGenotypesWriter, BCF2FieldWriter.SiteWriter, BCF2FieldWriter.StaticallyTypeGenotypesWriter

Constructor Summary

Constructors
Constructor Description

IGFGenotypesWriter(VCFHeader header, BCF2FieldEncoder fieldEncoder, IntGenotypeFieldAccessors.Accessor ige)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`addGenotype(BCF2Encoder encoder, VariantContext vc, Genotype g)`
`protected int`	`numElements(VariantContext vc, Genotype g)`
`void`	`start(BCF2Encoder encoder, VariantContext vc)`

Methods inherited from class htsjdk.variant.variantcontext.writer.BCF2FieldWriter
done, getField, getFieldEncoder, getHeader, toString

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

IGFGenotypesWriter

public IGFGenotypesWriter(VCFHeader header,
                          BCF2FieldEncoder fieldEncoder,
                          IntGenotypeFieldAccessors.Accessor ige)

Method Detail

start

public void start(BCF2Encoder encoder,
                  VariantContext vc)
           throws IOException

Overrides:: start in class BCF2FieldWriter.GenotypesWriter
Throws:: IOException

addGenotype

public void addGenotype(BCF2Encoder encoder,
                        VariantContext vc,
                        Genotype g)
                 throws IOException

Overrides:: addGenotype in class BCF2FieldWriter.GenotypesWriter
Throws:: IOException

numElements

protected int numElements(VariantContext vc,
                          Genotype g)

Overrides:: numElements in class BCF2FieldWriter.GenotypesWriter

Class BCF2FieldWriter.IGFGenotypesWriter

Nested Class Summary

Nested classes/interfaces inherited from class htsjdk.variant.variantcontext.writer.BCF2FieldWriter

Constructor Summary

Method Summary

Methods inherited from class htsjdk.variant.variantcontext.writer.BCF2FieldWriter

Methods inherited from class java.lang.Object

Constructor Detail

IGFGenotypesWriter

Method Detail

start

addGenotype

numElements