Constructor Detail

• BinList

  protected BinList(int referenceSequence,
                    BitSet bins)

  Create a new BinList over sequenceCount sequences, consisting of the given bins.

  Parameters:

  referenceSequence - Reference sequence to which these bins are relevant.

  bins - The given bins to include.

Method Detail

• iterator

  public Iterator<Bin> iterator()

  Gets an iterator over all selected bins.

  Specified by:

  iterator in interface Iterable<Bin>

  Returns:

  An iterator over all selected bins.

• getReferenceSequence

  protected int getReferenceSequence()

  Get the reference sequence to which this bin belongs.

  Returns:

  Integer representing the reference sequence.

• getBins

  protected BitSet getBins()

  Retrieves the bins stored in this list.

  Returns:

  A bitset where a bin is present in the list if the bit is true.