DataReaderFactory (htsjdk 2.8.1 API)

java.lang.Object
- htsjdk.samtools.cram.encoding.reader.DataReaderFactory

public class DataReaderFactory
extends Object

Nested Class Summary

Nested Classes
Modifier and Type Class and Description

static class DataReaderFactory.DataReaderWithStats<T>

Nested Classes
Modifier and Type	Class and Description
`static class`	`DataReaderFactory.DataReaderWithStats<T>`

Constructor Summary

Constructors
Constructor and Description

DataReaderFactory()

Constructors
Constructor and Description
`DataReaderFactory()`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`AbstractReader`	`buildReader(AbstractReader reader, BitInputStream bitInputStream, Map<Integer,InputStream> inputMap, CompressionHeader header, int refId)`
`Map<String,DataReaderFactory.DataReaderWithStats>`	`getStats(CramRecordReader reader)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail
- DataReaderFactory
```
public DataReaderFactory()
```

Method Detail

buildReader

public AbstractReader buildReader(AbstractReader reader,
                                  BitInputStream bitInputStream,
                                  Map<Integer,InputStream> inputMap,
                                  CompressionHeader header,
                                  int refId)
                           throws IllegalArgumentException

Throws:: IllegalArgumentException

getStats

public Map<String,DataReaderFactory.DataReaderWithStats> getStats(CramRecordReader reader)
                                                           throws IllegalArgumentException,
                                                                  IllegalAccessException

Throws:: IllegalArgumentException; IllegalAccessException

Class DataReaderFactory

Nested Class Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

DataReaderFactory

Method Detail

buildReader

getStats