ReadBase (htsjdk 2.8.1 API)

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java.lang.Object
- htsjdk.samtools.cram.encoding.readfeatures.ReadBase

All Implemented Interfaces:

ReadFeature, Serializable
```
public class ReadBase
extends Object
implements Serializable, ReadFeature
```
A read feature representing a single base with associated quality score.

See Also:

Serialized Form

Field Summary

Fields
Modifier and Type Field and Description

static byte operator

Constructor Summary

Constructors
Constructor and Description

ReadBase(int position, byte base, byte qualityScore)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`boolean`	`equals(Object obj)`
`byte`	`getBase()`
`byte`	`getOperator()` Read features are distinguished by operator, similar to cigar operator.
`int`	`getPosition()`
`byte`	`getQualityScore()`
`void`	`setBase(byte base)`
`void`	`setPosition(int position)`
`void`	`setQualityScore(byte qualityScore)`
`String`	`toString()`

Methods inherited from class java.lang.Object
clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Field Detail
  - operator
```
public static final byte operator
```
    See Also:
    
    Constant Field Values
- Constructor Detail
  - ReadBase
```
public ReadBase(int position,
                byte base,
                byte qualityScore)
```
- Method Detail
  - getOperator
```
public byte getOperator()
```
    Description copied from interface: ReadFeature
    
    Read features are distinguished by operator, similar to cigar operator.
    
    Specified by:
    
    getOperator in interface ReadFeature
    
    Returns:
    
    type of the read feature
  - getPosition
```
public int getPosition()
```
    Specified by:
    
    getPosition in interface ReadFeature
    
    Returns:
    
    zero-based position in the read
  - setPosition
```
public void setPosition(int position)
```
    Specified by:
    
    setPosition in interface ReadFeature
  - getQualityScore
```
public byte getQualityScore()
```
  - setQualityScore
```
public void setQualityScore(byte qualityScore)
```
  - equals
```
public boolean equals(Object obj)
```
    Overrides:
    
    equals in class Object
  - toString
```
public String toString()
```
    Overrides:
    
    toString in class Object
  - getBase
```
public byte getBase()
```
  - setBase
```
public void setBase(byte base)
```

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