SoftClip (htsjdk 2.8.1 API)

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java.lang.Object
- htsjdk.samtools.cram.encoding.readfeatures.SoftClip

All Implemented Interfaces:

ReadFeature, Serializable
```
public class SoftClip
extends Object
implements Serializable, ReadFeature
```
A read feature representing a soft clip similar to CigarOperator.S.

See Also:

Serialized Form

Field Summary

Fields
Modifier and Type Field and Description

static byte operator

Constructor Summary

Constructors
Constructor and Description

SoftClip()

SoftClip(int position, byte[] sequence)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`boolean`	`equals(Object obj)`
`byte`	`getOperator()` Read features are distinguished by operator, similar to cigar operator.
`int`	`getPosition()`
`byte[]`	`getSequence()`
`void`	`setPosition(int position)`
`void`	`setSequence(byte[] sequence)`
`String`	`toString()`

Methods inherited from class java.lang.Object
clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Field Detail
  - operator
```
public static final byte operator
```
    See Also:
    
    Constant Field Values
- Constructor Detail
  - SoftClip
```
public SoftClip()
```
  - SoftClip
```
public SoftClip(int position,
                byte[] sequence)
```
- Method Detail
  - getSequence
```
public byte[] getSequence()
```
  - setSequence
```
public void setSequence(byte[] sequence)
```
  - getOperator
```
public byte getOperator()
```
    Description copied from interface: ReadFeature
    
    Read features are distinguished by operator, similar to cigar operator.
    
    Specified by:
    
    getOperator in interface ReadFeature
    
    Returns:
    
    type of the read feature
  - getPosition
```
public int getPosition()
```
    Specified by:
    
    getPosition in interface ReadFeature
    
    Returns:
    
    zero-based position in the read
  - setPosition
```
public void setPosition(int position)
```
    Specified by:
    
    setPosition in interface ReadFeature
  - equals
```
public boolean equals(Object obj)
```
    Overrides:
    
    equals in class Object
  - toString
```
public String toString()
```
    Overrides:
    
    toString in class Object

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