Md5CalculatingInputStream (htsjdk 2.8.1 API)

java.lang.Object
- java.io.InputStream
- - htsjdk.samtools.util.Md5CalculatingInputStream

All Implemented Interfaces:

Closeable, AutoCloseable
```
public class Md5CalculatingInputStream
extends InputStream
```
Class to generate an MD5 string for a file as it is being read

Constructor Summary

Constructors
Constructor and Description
`Md5CalculatingInputStream(InputStream is, File digestFile)` Constructor that takes in the InputStream that we are wrapping and creates the MD5 MessageDigest

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`int`	`available()`
`void`	`close()`
`void`	`mark(int readlimit)`
`boolean`	`markSupported()`
`String`	`md5()`
`int`	`read()`
`int`	`read(byte[] b)`
`int`	`read(byte[] b, int off, int len)`
`void`	`reset()`
`long`	`skip(long n)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - Md5CalculatingInputStream
```
public Md5CalculatingInputStream(InputStream is,
                                 File digestFile)
```
    Constructor that takes in the InputStream that we are wrapping and creates the MD5 MessageDigest
- Method Detail
  - read
```
public int read()
         throws IOException
```
    Specified by:
    
    read in class InputStream
    
    Throws:
    
    IOException
  - read
```
public int read(byte[] b)
         throws IOException
```
    Overrides:
    
    read in class InputStream
    
    Throws:
    
    IOException
  - read
```
public int read(byte[] b,
                int off,
                int len)
         throws IOException
```
    Overrides:
    
    read in class InputStream
    
    Throws:
    
    IOException
  - md5
```
public String md5()
```
  - close
```
public void close()
           throws IOException
```
    Specified by:
    
    close in interface Closeable
    
    Specified by:
    
    close in interface AutoCloseable
    
    Overrides:
    
    close in class InputStream
    
    Throws:
    
    IOException
  - markSupported
```
public boolean markSupported()
```
    Overrides:
    
    markSupported in class InputStream
  - mark
```
public void mark(int readlimit)
```
    Overrides:
    
    mark in class InputStream
  - reset
```
public void reset()
           throws IOException
```
    Overrides:
    
    reset in class InputStream
    
    Throws:
    
    IOException
  - skip
```
public long skip(long n)
          throws IOException
```
    Overrides:
    
    skip in class InputStream
    
    Throws:
    
    IOException
  - available
```
public int available()
              throws IOException
```
    Overrides:
    
    available in class InputStream
    
    Throws:
    
    IOException

Class Md5CalculatingInputStream

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

Md5CalculatingInputStream

Method Detail

read

read

read

md5

close

markSupported

mark

reset

skip

available