FeatureReader (htsjdk 2.8.1 API)

Type Parameters:

T - a feature type

All Superinterfaces:

AutoCloseable, Closeable

All Known Implementing Classes:

AbstractFeatureReader, TabixFeatureReader, TribbleIndexedFeatureReader
```
public interface FeatureReader<T extends Feature>
extends Closeable
```
the basic interface that feature sources need to match

Method Summary

All Methods Instance Methods Abstract Methods
Modifier and Type	Method and Description
`void`	`close()`
`Object`	`getHeader()`
`List<String>`	`getSequenceNames()`
`CloseableTribbleIterator<T>`	`iterator()`
`CloseableTribbleIterator<T>`	`query(String chr, int start, int end)`

Method Detail

query

CloseableTribbleIterator<T> query(String chr,
                                  int start,
                                  int end)
                           throws IOException

Throws:: IOException

iterator

CloseableTribbleIterator<T> iterator()
                              throws IOException

Throws:: IOException

close
```
void close()
    throws IOException
```
Specified by:

close in interface AutoCloseable

Specified by:

close in interface Closeable

Throws:

IOException

getSequenceNames
```
List<String> getSequenceNames()
```

getHeader
```
Object getHeader()
```

Interface FeatureReader<T extends Feature>

Method Summary

Method Detail

query

iterator

close

getSequenceNames

getHeader