Field Detail

• STANDARD_INDEX_EXTENSION

  public static final String STANDARD_INDEX_EXTENSION

  See Also:

  Constant Field Values

Method Detail

• indexFile

  public static String indexFile(String filename)

  Return the name of the index file for the provided vcf filename Does not actually create an index

  Parameters:

  filename - name of the vcf file

  Returns:

  non-null String representing the index filename

• indexFile

  public static File indexFile(File file)

  Return the File of the index file for the provided vcf file Does not actually create an index

  Parameters:

  file - the vcf file

  Returns:

  a non-null File representing the index

• tabixIndexFile

  public static String tabixIndexFile(String filename)

  Return the name of the tabix index file for the provided vcf filename Does not actually create an index

  Parameters:

  filename - name of the vcf file

  Returns:

  non-null String representing the index filename

• tabixIndexFile

  public static File tabixIndexFile(File file)

  Return the File of the tabix index file for the provided vcf file Does not actually create an index

  Parameters:

  file - the vcf file

  Returns:

  a non-null File representing the index