Uses of Interface
jebl.evolution.graphs.Edge
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Packages that use Edge Package Description jebl.evolution.graphs jebl.evolution.trees -
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Uses of Edge in jebl.evolution.graphs
Methods in jebl.evolution.graphs that return Edge Modifier and Type Method Description EdgeGraph. getEdge(Node node1, Node node2)Returns the Edge that connects these two nodesMethods in jebl.evolution.graphs that return types with arguments of type Edge Modifier and Type Method Description java.util.Set<Edge>Graph. getEdges()java.util.List<Edge>Graph. getEdges(Node node)Returns a list of edges connected to this nodeMethods in jebl.evolution.graphs with parameters of type Edge Modifier and Type Method Description Node[]Graph. getNodes(Edge edge)Returns an array of 2 nodes which are the nodes at either end of the edge. -
Uses of Edge in jebl.evolution.trees
Classes in jebl.evolution.trees that implement Edge Modifier and Type Class Description classBaseEdgeCommon implementation of Attributable interface used by Nodes.Methods in jebl.evolution.trees that return Edge Modifier and Type Method Description EdgeCompactRootedTree. getEdge(Node node1, Node node2)EdgeFilteredRootedTree. getEdge(Node node1, Node node2)EdgeMutableRootedTree. getEdge(Node node1, Node node2)Returns the Edge that connects these two nodesEdgeRootedFromUnrooted. getEdge(Node node1, Node node2)EdgeRootedSubtree. getEdge(Node node1, Node node2)Returns the Edge that connects these two nodesEdgeSimpleRootedTree. getEdge(Node node1, Node node2)Returns the Edge that connects these two nodesEdgeSimpleTree. getEdge(Node node1, Node node2)Returns the Edge that connects these two nodesEdgeCompactRootedTree. getParentEdge(Node node)EdgeMutableRootedTree. getParentEdge(Node node)EdgeRootedSubtree. getParentEdge(Node node)EdgeSimpleRootedTree. getParentEdge(Node node)Methods in jebl.evolution.trees that return types with arguments of type Edge Modifier and Type Method Description java.util.Set<Edge>CompactRootedTree. getEdges()java.util.List<Edge>CompactRootedTree. getEdges(Node node)java.util.Set<Edge>FilteredRootedTree. getEdges()java.util.List<Edge>FilteredRootedTree. getEdges(Node node)java.util.Set<Edge>MutableRootedTree. getEdges()java.util.List<Edge>MutableRootedTree. getEdges(Node node)Returns a list of edges connected to this nodejava.util.Set<Edge>RootedFromUnrooted. getEdges()java.util.List<Edge>RootedFromUnrooted. getEdges(Node node)Returns a list of edges connected to this nodejava.util.Set<Edge>RootedSubtree. getEdges()java.util.List<Edge>RootedSubtree. getEdges(Node node)Returns a list of edges connected to this nodejava.util.Set<Edge>SimpleRootedTree. getEdges()java.util.List<Edge>SimpleRootedTree. getEdges(Node node)Returns a list of edges connected to this nodejava.util.Set<Edge>SimpleTree. getEdges()java.util.List<Edge>SimpleTree. getEdges(Node node)Returns a list of edges connected to this nodejava.util.Set<Edge>CompactRootedTree. getExternalEdges()java.util.Set<Edge>FilteredRootedTree. getExternalEdges()java.util.Set<Edge>MutableRootedTree. getExternalEdges()The set of external edges.java.util.Set<Edge>RootedFromUnrooted. getExternalEdges()The set of external edges.java.util.Set<Edge>RootedSubtree. getExternalEdges()The set of external edges.java.util.Set<Edge>SimpleRootedTree. getExternalEdges()The set of external edges.java.util.Set<Edge>SimpleTree. getExternalEdges()The set of external edges.java.util.Set<Edge>Tree. getExternalEdges()java.util.Set<Edge>CompactRootedTree. getInternalEdges()java.util.Set<Edge>FilteredRootedTree. getInternalEdges()java.util.Set<Edge>MutableRootedTree. getInternalEdges()The set of internal edges.java.util.Set<Edge>RootedFromUnrooted. getInternalEdges()The set of internal edges.java.util.Set<Edge>RootedSubtree. getInternalEdges()The set of internal edges.java.util.Set<Edge>SimpleRootedTree. getInternalEdges()The set of internal edges.java.util.Set<Edge>SimpleTree. getInternalEdges()The set of internal edges.java.util.Set<Edge>Tree. getInternalEdges()Methods in jebl.evolution.trees with parameters of type Edge Modifier and Type Method Description NodeSimpleRootedTree. addNode(Edge edge)Adds a new node at the midpoint of the given edgeNode[]CompactRootedTree. getNodes(Edge edge)Node[]FilteredRootedTree. getNodes(Edge edge)Node[]MutableRootedTree. getNodes(Edge edge)Returns an array of 2 nodes which are the nodes at either end of the edge.Node[]RootedFromUnrooted. getNodes(Edge edge)Node[]RootedSubtree. getNodes(Edge edge)Returns an array of 2 nodes which are the nodes at either end of the edge.Node[]SimpleRootedTree. getNodes(Edge edge)Returns an array of 2 nodes which are the nodes at either end of the edge.Node[]SimpleTree. getNodes(Edge edge)Returns an array of 2 nodes which are the nodes at either end of the edge.static voidSplitUtils. getSplit(java.util.List<Taxon> taxa, Tree tree, Edge edge, boolean[] split)get split for branch associated with internal nodebooleanSimpleTree. isExternal(Edge edge)voidSimpleTree. setEdgeLength(Edge edge, double length)Change length of an existing edge.
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