Uses of Class
jebl.evolution.sequences.NucleotideState
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Packages that use NucleotideState Package Description jebl.evolution.sequences -
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Uses of NucleotideState in jebl.evolution.sequences
Fields in jebl.evolution.sequences declared as NucleotideState Modifier and Type Field Description static NucleotideStateNucleotides. A_STATEstatic NucleotideStateNucleotides. B_STATEstatic NucleotideStateNucleotides. C_STATEstatic NucleotideState[]Nucleotides. CANONICAL_STATESDeprecated.static NucleotideState[]Nucleotides. COMPLEMENTARY_STATESDeprecated.static NucleotideStateNucleotides. D_STATEstatic NucleotideStateNucleotides. G_STATEstatic NucleotideStateNucleotides. GAP_STATEstatic NucleotideStateNucleotides. H_STATEstatic NucleotideStateNucleotides. K_STATEstatic NucleotideStateNucleotides. M_STATEstatic NucleotideStateNucleotides. N_STATEstatic NucleotideStateNucleotides. R_STATEstatic NucleotideStateNucleotides. S_STATEstatic NucleotideState[]Nucleotides. STATESDeprecated.static NucleotideStateNucleotides. T_STATEstatic NucleotideStateNucleotides. UNKNOWN_STATEstatic NucleotideStateNucleotides. V_STATEstatic NucleotideStateNucleotides. W_STATEstatic NucleotideStateNucleotides. Y_STATEMethods in jebl.evolution.sequences that return NucleotideState Modifier and Type Method Description static NucleotideState[]Utils. complement(NucleotideState[] sequence)static NucleotideStateNucleotides. getComplementaryState(NucleotideState state)static NucleotideStateNucleotides. getGapState()static NucleotideStateNucleotides. getState(char code)static NucleotideStateNucleotides. getState(int index)static NucleotideStateNucleotides. getState(java.lang.String code)static NucleotideStateNucleotides. getUnknownState()static NucleotideState[]Utils. reverseComplement(NucleotideState[] sequence)static NucleotideState[]Codons. toNucleotides(CodonState state)static NucleotideState[]Codons. toNucleotides(State[] states)static NucleotideState[]Nucleotides. toStateArray(byte[] indexArray)static NucleotideState[]Nucleotides. toStateArray(java.lang.String sequenceString)Methods in jebl.evolution.sequences that return types with arguments of type NucleotideState Modifier and Type Method Description static java.util.List<NucleotideState>Nucleotides. getCanonicalStates()Methods in jebl.evolution.sequences with parameters of type NucleotideState Modifier and Type Method Description static NucleotideState[]Utils. complement(NucleotideState[] sequence)static NucleotideStateNucleotides. getComplementaryState(NucleotideState state)static CodonStateCodons. getState(NucleotideState nucleotide1, NucleotideState nucleotide2, NucleotideState nucleotide3)AminoAcidStateGeneticCode. getTranslation(NucleotideState nucleotide1, NucleotideState nucleotide2, NucleotideState nucleotide3)Returns the state associated with AminoAcid represented by the three nucleotides.static booleanNucleotides. isGap(NucleotideState state)static booleanNucleotides. isUnknown(NucleotideState state)static NucleotideState[]Utils. reverseComplement(NucleotideState[] sequence)
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