Uses of Class
jebl.evolution.trees.TreeBuilderFactory.DistanceModel
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Packages that use TreeBuilderFactory.DistanceModel Package Description jebl.evolution.align Provides classes and interfaces for pairwise alignment of two sequences.jebl.evolution.trees -
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Uses of TreeBuilderFactory.DistanceModel in jebl.evolution.align
Methods in jebl.evolution.align that return TreeBuilderFactory.DistanceModel Modifier and Type Method Description static TreeBuilderFactory.DistanceModelSequenceAlignmentsDistanceMatrix. getDefaultDistanceModel(java.util.List<Sequence> seqs)Methods in jebl.evolution.align with parameters of type TreeBuilderFactory.DistanceModel Modifier and Type Method Description static AlignmentTreeBuilderFactory.ResultAlignmentTreeBuilderFactory. build(java.util.List<Sequence> seqs, TreeBuilderFactory.Method method, PairwiseAligner aligner, ProgressListener progressListener, TreeBuilderFactory.DistanceModel model)static AlignmentTreeBuilderFactory.ResultAlignmentTreeBuilderFactory. build(Alignment alignment, TreeBuilderFactory.Method method, TreeBuilderFactory.DistanceModel model, ProgressListener progressListener)static AlignmentTreeBuilderFactory.ResultAlignmentTreeBuilderFactory. build(Alignment alignment, TreeBuilderFactory.Method method, TreeBuilderFactory.DistanceModel model, ProgressListener progressListener, boolean useTwiceMaximumDistanceWhenPairwiseDistanceNotCalculatable)Constructors in jebl.evolution.align with parameters of type TreeBuilderFactory.DistanceModel Constructor Description SequenceAlignmentsDistanceMatrix(java.util.List<Sequence> seqs, PairwiseAligner aligner, ProgressListener progress, TreeBuilderFactory.DistanceModel model) -
Uses of TreeBuilderFactory.DistanceModel in jebl.evolution.trees
Methods in jebl.evolution.trees that return TreeBuilderFactory.DistanceModel Modifier and Type Method Description static TreeBuilderFactory.DistanceModelTreeBuilderFactory.DistanceModel. valueOf(java.lang.String name)Returns the enum constant of this type with the specified name.static TreeBuilderFactory.DistanceModel[]TreeBuilderFactory.DistanceModel. values()Returns an array containing the constants of this enum type, in the order they are declared.
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