Field Detail

• thisID

  public java.lang.String thisID

• ms

  public ModelSet ms

• index

  public int index

• isVisible

  public boolean isVisible

• isHidden

  public boolean isHidden

• isTrajectory

  public boolean isTrajectory

• isValid

  public boolean isValid

• colix

  public short colix

• labelColix

  public short labelColix

• mad

  public int mad

• tickInfo

  public TickInfo tickInfo

• traceX

  public int traceX

• traceY

  public int traceY

• count

  public int count

• countPlusIndices

  public int[] countPlusIndices

• pts

  public Point3fi[] pts

• value

  public float value

• strFormat

  public java.lang.String strFormat

• property

  public java.lang.String property

• units

  public java.lang.String units

• text

  public Text text

• vwr

  private Viewer vwr

• strMeasurement

  private java.lang.String strMeasurement

• type

  private java.lang.String type

• tainted

  private boolean tainted

• renderAxis

  public javajs.util.A4 renderAxis

• renderArc

  public javajs.util.P3 renderArc

• newUnits

  private java.lang.String newUnits

• fixedValue

  public float fixedValue

• isPending

  private boolean isPending

• NMR_NOT

  public static final int NMR_NOT

  See Also:

  Constant Field Values

• NMR_DC

  public static final int NMR_DC

  See Also:

  Constant Field Values

• NMR_JC

  public static final int NMR_JC

  See Also:

  Constant Field Values

• NMR_NOE_OR_J

  public static final int NMR_NOE_OR_J

  See Also:

  Constant Field Values

Constructor Detail

• Measurement

  public Measurement()

Method Detail

• isTainted

  public boolean isTainted()

• setM

  public Measurement setM​(ModelSet modelSet,
                          Measurement m,
                          float value,
                          short colix,
                          java.lang.String strFormat,
                          int index)

• setPoints

  public Measurement setPoints​(ModelSet modelSet,
                               int[] indices,
                               Point3fi[] points,
                               TickInfo tickInfo)

• setCount

  public void setCount​(int count)

• setCountM

  protected void setCountM​(int count)

• getAtomIndex

  public int getAtomIndex​(int n)

• getAtom

  public Point3fi getAtom​(int n)

• getLastIndex

  public int getLastIndex()

• getString

  public java.lang.String getString()

• toString

  public java.lang.String toString()

  Overrides:

  toString in class java.lang.Object

• getStringUsing

  java.lang.String getStringUsing​(Viewer vwr,
                                  java.lang.String strFormat,
                                  java.lang.String units)

• getStringDetail

  public java.lang.String getStringDetail()

• refresh

  public void refresh​(Point3fi[] pts)

• getMeasurementScript

  public java.lang.String getMeasurementScript​(java.lang.String sep,
                                               boolean withModelIndex)

  Used by MouseManager and Picking Manager to build the script

  Parameters:

  sep -

  withModelIndex - is needed for points only

  Returns:

  measure ((1}) ({2})....

• formatMeasurementAs

  public void formatMeasurementAs​(java.lang.String strFormat,
                                  java.lang.String units,
                                  boolean useDefault)

• formatMeasurement

  public void formatMeasurement​(java.lang.String units)

• reformatDistanceIfSelected

  public void reformatDistanceIfSelected()

• formatDistance

  private java.lang.String formatDistance​(java.lang.String units)

  Parameters:

  units - from MEASURE or measure()

  Returns:

• fixUnits

  private static java.lang.String fixUnits​(java.lang.String units)

• fixValue

  public float fixValue​(java.lang.String units,
                        boolean andRound)

  Parameters:

  units - final units

  andRound -

  Returns:

  float value

• checkJ

  private void checkJ​(java.lang.String units)

• nmrType

  public static int nmrType​(java.lang.String units)

• formatAngle

  private java.lang.String formatAngle​(float angle)

• getLabelString

  private java.lang.String getLabelString()

• formatString

  private java.lang.String formatString​(float value,
                                        java.lang.String units,
                                        java.lang.String label)

• sameAsPoints

  public boolean sameAsPoints​(int[] indices,
                              Point3fi[] points)

• sameAsIJ

  private boolean sameAsIJ​(int[] atoms,
                           Point3fi[] points,
                           int i,
                           int j)

• sameAs

  public boolean sameAs​(int i,
                        int j)

• getPropMeasurement

  public float getPropMeasurement​(Point3fi[] pts)

• getMeasurement

  public float getMeasurement​(Point3fi[] pts)

• getLabel

  public java.lang.String getLabel​(int i,
                                   boolean asBitSet,
                                   boolean withModelIndex)

• setModelIndex

  public void setModelIndex​(short modelIndex)

• isValid

  public boolean isValid()

• find

  public static int find​(javajs.util.Lst<Measurement> measurements,
                         Measurement m)

• isConnected

  public boolean isConnected​(Atom[] atoms,
                             int count)

• getInfoAsString

  public java.lang.String getInfoAsString​(java.lang.String units)

• isInRange

  public boolean isInRange​(RadiusData radiusData,
                           float value)

• isIntramolecular

  public boolean isIntramolecular​(Atom[] atoms,
                                  int count)

• isMin

  public boolean isMin​(java.util.Map<java.lang.String,​java.lang.Integer> htMin)

• isUnits

  public static boolean isUnits​(java.lang.String s)