Package org.jmol.popup

Class JmolPopup

  • All Implemented Interfaces:
    GenericMenuInterface
    Direct Known Subclasses:
    AwtJmolPopup, JSJmolPopup
    public abstract class JmolPopup
extends JmolGenericPopup
    An abstract popup class that is instantiated for a given platform and context as one of: 
       -- abstract JmolPopup
      -- AwtJmolPopup
      -- JSJmolPopup

    • Field Detail

      • updateMode

        protected int updateMode

      • titleWidthMax

        private int titleWidthMax

      • nullModelSetName

        private java.lang.String nullModelSetName

      • modelSetName

        private java.lang.String modelSetName

      • modelSetFileName

        private java.lang.String modelSetFileName

      • modelSetRoot

        private java.lang.String modelSetRoot

      • currentFrankId

        private java.lang.String currentFrankId

      • configurationSelected

        private java.lang.String configurationSelected

      • altlocs

        private java.lang.String altlocs

      • frankList

        private java.lang.Object[][] frankList

      • modelSetInfo

        private java.util.Map<java.lang.String,​java.lang.Object> modelSetInfo

      • modelInfo

        protected java.util.Map<java.lang.String,​java.lang.Object> modelInfo

      • NotPDB

        private javajs.util.Lst<SC> NotPDB

      • PDBOnly

        private javajs.util.Lst<SC> PDBOnly

      • FileUnitOnly

        private javajs.util.Lst<SC> FileUnitOnly

      • FileMolOnly

        private javajs.util.Lst<SC> FileMolOnly

      • UnitcellOnly

        private javajs.util.Lst<SC> UnitcellOnly

      • SingleModelOnly

        private javajs.util.Lst<SC> SingleModelOnly

      • FramesOnly

        private javajs.util.Lst<SC> FramesOnly

      • VibrationOnly

        private javajs.util.Lst<SC> VibrationOnly

      • Special

        protected javajs.util.Lst<SC> Special

      • SymmetryOnly

        private javajs.util.Lst<SC> SymmetryOnly

      • ChargesOnly

        private javajs.util.Lst<SC> ChargesOnly

      • TemperatureOnly

        private javajs.util.Lst<SC> TemperatureOnly

      • fileHasUnitCell

        private boolean fileHasUnitCell

      • haveBFactors

        private boolean haveBFactors

      • haveCharges

        private boolean haveCharges

      • isLastFrame

        private boolean isLastFrame

      • isMultiConfiguration

        private boolean isMultiConfiguration

      • isMultiFrame

        private boolean isMultiFrame

      • isPDB

        private boolean isPDB

      • hasSymmetry

        private boolean hasSymmetry

      • isUnitCell

        private boolean isUnitCell

      • isVibration

        private boolean isVibration

      • isZapped

        private boolean isZapped

      • modelIndex

        protected int modelIndex

      • modelCount

        private int modelCount

      • ac

        private int ac

      • group3List

        private java.lang.String group3List

      • group3Counts

        private int[] group3Counts

      • cnmrPeaks

        private javajs.util.Lst<java.lang.String> cnmrPeaks

      • hnmrPeaks

        private javajs.util.Lst<java.lang.String> hnmrPeaks

      • noZapped

        private final java.lang.String[] noZapped

    • Constructor Detail

      • JmolPopup

        public JmolPopup()

    • Method Detail

      • jpiUpdateComputedMenus

        public void jpiUpdateComputedMenus()

      • updateMenus

        protected void updateMenus()

      • appCheckItem

        protected void appCheckItem​(java.lang.String item,
                            SC newMenu)
        Description copied from class: GenericPopup
        Opportunity to do something special with an item.
        Overrides:
        appCheckItem in class GenericPopup

      • appGetMenuAsString

        protected java.lang.String appGetMenuAsString​(java.lang.String title)
        Overrides:
        appGetMenuAsString in class GenericPopup
        Returns:
        null

      • getScriptForCallback

        protected java.lang.String getScriptForCallback​(SC source,
                                                java.lang.String id,
                                                java.lang.String script)
        Specified by:
        getScriptForCallback in class GenericPopup

      • appUpdateSpecialCheckBoxValue

        protected void appUpdateSpecialCheckBoxValue​(SC item,
                                             java.lang.String what,
                                             boolean TF)
        (1) setOption --> set setOption true or set setOption false
        Specified by:
        appUpdateSpecialCheckBoxValue in class GenericPopup
        Parameters:
        item -
        what - option to set
        TF - true or false

      • setFrankMenu

        private void setFrankMenu​(java.lang.String id)

      • checkBoolean

        private boolean checkBoolean​(java.lang.String key)

      • getViewerData

        private void getViewerData()

      • appCheckSpecialMenu

        public void appCheckSpecialMenu​(java.lang.String item,
                                SC subMenu,
                                java.lang.String word)
        Description copied from class: GenericPopup
        Opportunity to do something special with a given submenu is created
        Overrides:
        appCheckSpecialMenu in class GenericPopup

      • updateFileMenu

        protected void updateFileMenu()

      • getMenuText

        private java.lang.String getMenuText​(java.lang.String key)

      • updateSelectMenu

        protected void updateSelectMenu()

      • updateElementsComputedMenu

        protected void updateElementsComputedMenu​(javajs.util.BS elementsPresentBitSet)

      • updateSpectraMenu

        protected void updateSpectraMenu()

      • setSpectraMenu

        private boolean setSpectraMenu​(SC menu,
                               javajs.util.Lst<java.lang.String> peaks)

      • updateHeteroComputedMenu

        protected void updateHeteroComputedMenu​(java.util.Map<java.lang.String,​java.lang.String> htHetero)

      • updateSurfMoComputedMenu

        protected void updateSurfMoComputedMenu​(java.util.Map<java.lang.String,​java.lang.Object> moData)

      • updateFileTypeDependentMenus

        protected void updateFileTypeDependentMenus()

      • updateSceneComputedMenu

        protected void updateSceneComputedMenu()

      • updatePDBComputedMenus

        protected void updatePDBComputedMenus()

      • setSecStrucMenu

        private boolean setSecStrucMenu​(SC menu,
                                java.util.Map<java.lang.String,​java.lang.Object> dssr)

      • updateGroup3List

        private int updateGroup3List​(SC menu,
                             java.lang.String name)

      • augmentGroup3List

        private int augmentGroup3List​(SC menu,
                              java.lang.String type,
                              boolean addSeparator)

      • updateSYMMETRYComputedMenus

        protected void updateSYMMETRYComputedMenus()

      • updateSYMMETRYShowComputedMenu

        protected void updateSYMMETRYShowComputedMenu()

      • updateSYMMETRYSelectComputedMenu

        protected void updateSYMMETRYSelectComputedMenu()

      • updateFRAMESbyModelComputedMenu

        protected void updateFRAMESbyModelComputedMenu()

      • updateConfigurationComputedMenu

        protected void updateConfigurationComputedMenu()

      • updateModelSetComputedMenu

        protected void updateModelSetComputedMenu()

      • gti

        private java.lang.String gti​(java.lang.String s,
                             int n)

      • gto

        private java.lang.String gto​(java.lang.String s,
                             java.lang.Object o)

      • updateAboutSubmenu

        protected void updateAboutSubmenu()

      • updateLanguageSubmenu

        protected void updateLanguageSubmenu()

      • updateSpecialMenuItem

        protected void updateSpecialMenuItem​(SC m)

      • getSpecialLabel

        protected java.lang.String getSpecialLabel​(java.lang.String name,
                                           java.lang.String text)
        menus or menu items with SPECIAL in their name are sent here for on-the-fly labeling
        Parameters:
        name -
        text -
        Returns:
        revised text