ShiftIndelsTest Class Reference

Static Public Member Functions
static void	testShift (const char *input, const char *output)

Detailed Description

Definition at line 20 of file ShiftIndels.h.

Member Function Documentation

testShift()

void ShiftIndelsTest::testShift ( const char * input, const char * output )

static

Definition at line 31 of file ShiftIndels.cpp.

{
    SamFile inSam, outSam;
 
    assert(inSam.OpenForRead(input));
    assert(outSam.OpenForWrite(output));
 
 
    // Read the SAM Header.
    SamFileHeader samHeader;
    assert(inSam.ReadHeader(samHeader));
    assert(outSam.WriteHeader(samHeader));
 
 
   SamRecord samRecord;
   int readNum = 1;
   bool shiftResult = true;
   while(inSam.ReadRecord(samHeader, samRecord))
   {
       if((readNum == 3)|| (readNum == 5))
       {
           shiftResult = false;
       }
       else
       {
           shiftResult = true;
       }
       ++readNum;
 
       assert(samRecord.shiftIndelsLeft() == shiftResult);
       assert(outSam.WriteRecord(samHeader, samRecord));
   }
 
}

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The documentation for this class was generated from the following files:

• bam/test/ShiftIndels.h
• bam/test/ShiftIndels.cpp