TestPileupElement Class Reference

Inheritance diagram for TestPileupElement:

Collaboration diagram for TestPileupElement:

Public Member Functions
virtual void	analyze ()
	Perform the analysis associated with this class.
Public Member Functions inherited from PileupElementBaseQual
	PileupElementBaseQual (const PileupElementBaseQual &q)
virtual void	addEntry (SamRecord &record)
	Add an entry to this pileup element.
virtual void	reset (int32_t refPosition)
	Resets the entry, setting the new position associated with this element.
Public Member Functions inherited from PileupElement
	PileupElement ()
	Pileup element constructor.
	PileupElement (const PileupElement &q)
	Constructor that resets the pileup element, does not copy, just resets.
virtual	~PileupElement ()
	Pileup element destructor.
const char *	getChromosome () const
	Get the chromosome name stored in this element.
int32_t	getRefPosition () const
	Get the reference position stored in this element.
char	getRefBase ()
	Returns the reference base for this pileup element.

Additional Inherited Members
Static Public Member Functions inherited from PileupElement
static void	setReference (GenomeSequence *reference)
	Set the reference to use for all pilepElements.
Static Public Attributes inherited from PileupElement
static const int32_t	UNSET_POSITION = -1
Static Protected Member Functions inherited from PileupElement
static GenomeSequence *	getReference ()
	Get a pointer to the reference.

Detailed Description

Definition at line 23 of file TestPileup.h.

Member Function Documentation

analyze()

void TestPileupElement::analyze ( )

virtual

Perform the analysis associated with this class.

Reimplemented from PileupElementBaseQual.

Definition at line 25 of file TestPileup.cpp.

{
    assert(strcmp(getChromosome(), "") == 0);
    assert(getRefPosition() == 14000);
}

References PileupElement::getChromosome(), and PileupElement::getRefPosition().

---

The documentation for this class was generated from the following files:

• bam/test/TestPileup.h
• bam/test/TestPileup.cpp