|
| | BamIndex.cpp |
| | BamIndex.h |
| | BamInterface.cpp |
| | BamInterface.h |
| | CigarHelper.cpp |
| | CigarHelper.h |
| | GenericSamInterface.cpp |
| | GenericSamInterface.h |
| | Pileup.h |
| | PileupElement.cpp |
| | PileupElement.h |
| | PileupElementBaseQual.cpp |
| | PileupElementBaseQual.h |
| | PosList.cpp |
| | PosList.h |
| | SamCoordOutput.cpp |
| | SamCoordOutput.h |
| | SamFile.cpp |
| | SamFile.h |
| | SamFilter.cpp |
| | SamFilter.h |
| | SamFlag.h |
| | SamHelper.h |
| | SamInterface.cpp |
| | SamInterface.h |
| | SamQuerySeqWithRefHelper.cpp |
| | SamQuerySeqWithRefHelper.h |
| | SamRecord.cpp |
| | SamRecord.h |
| | SamRecordHelper.cpp |
| | SamRecordHelper.h |
| | SamRecordPool.cpp |
| | SamRecordPool.h |
| | SamReferenceInfo.cpp |
| | SamReferenceInfo.h |
| | SamStatistics.cpp |
| | SamStatistics.h |
| | SamStatus.h |
| | SamTags.cpp |
| | SamTags.h |
| | SamValidation.cpp |
| | SamValidation.h |