ChromosomeInfo Struct Reference

Public Member Functions
void	constructorClear ()
void	setChromosomeName (const char *n)
void	setAssemblyID (const char *newID)
void	setSpecies (const char *newSpecies)
void	setURI (const char *newURI)

Public Attributes
genomeIndex_t	start
genomeIndex_t	size
char	md5 [2 *MD5_DIGEST_LENGTH+1]
char	name [MAX_GENOME_INFO_STRING]
char	assemblyID [MAX_GENOME_INFO_STRING]
char	uri [MAX_GENOME_INFO_STRING]
char	species [MAX_GENOME_INFO_STRING]

Static Public Attributes
static const int	MAX_GENOME_INFO_STRING =128

Detailed Description

Definition at line 40 of file GenomeSequenceHelpers.h.

Member Function Documentation

constructorClear()

void ChromosomeInfo::constructorClear ( )

inline

Definition at line 44 of file GenomeSequenceHelpers.h.

    {
        memset(this,0, sizeof(*this));
    }

setAssemblyID()

void ChromosomeInfo::setAssemblyID ( const char * newID )

inline

Definition at line 62 of file GenomeSequenceHelpers.h.

    {
        strncpy(assemblyID, newID, sizeof(assemblyID)-1);
        name[sizeof(name)-1] = '\0';
    }

setChromosomeName()

void ChromosomeInfo::setChromosomeName ( const char * n )

inline

Definition at line 48 of file GenomeSequenceHelpers.h.

    {
        strncpy(name, n, sizeof(name)-1);
        name[sizeof(name)-1] = '\0';
    }

setSpecies()

void ChromosomeInfo::setSpecies ( const char * newSpecies )

inline

Definition at line 67 of file GenomeSequenceHelpers.h.

    {
        strncpy(species, newSpecies, sizeof(species)-1);
        species[sizeof(species)-1] = '\0';
    }

setURI()

void ChromosomeInfo::setURI ( const char * newURI )

inline

Definition at line 72 of file GenomeSequenceHelpers.h.

    {
        strncpy(uri, newURI, sizeof(uri)-1);
        uri[sizeof(uri)-1] = '\0';
    }

Member Data Documentation

assemblyID

char ChromosomeInfo::assemblyID[MAX_GENOME_INFO_STRING]

Definition at line 57 of file GenomeSequenceHelpers.h.

MAX_GENOME_INFO_STRING

const int ChromosomeInfo::MAX_GENOME_INFO_STRING =128

static

Definition at line 42 of file GenomeSequenceHelpers.h.

md5

char ChromosomeInfo::md5[2 *MD5_DIGEST_LENGTH+1]

Definition at line 55 of file GenomeSequenceHelpers.h.

name

char ChromosomeInfo::name[MAX_GENOME_INFO_STRING]

Definition at line 56 of file GenomeSequenceHelpers.h.

size

genomeIndex_t ChromosomeInfo::size

Definition at line 54 of file GenomeSequenceHelpers.h.

species

char ChromosomeInfo::species[MAX_GENOME_INFO_STRING]

Definition at line 59 of file GenomeSequenceHelpers.h.

start

genomeIndex_t ChromosomeInfo::start

Definition at line 53 of file GenomeSequenceHelpers.h.

uri

char ChromosomeInfo::uri[MAX_GENOME_INFO_STRING]

Definition at line 58 of file GenomeSequenceHelpers.h.

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The documentation for this struct was generated from the following file:

• general/GenomeSequenceHelpers.h